Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2616 ATGGACCCTCTAACCAAAGAATATACTTCAACTCCAGCCCTTTTCCCTCCCTCAGAATTTCTATATATTGTCCCCTCAACTCTCCTTATTTCTCACTCCTCTGCTTCTTTCTGTTCCTTCATTTCTTACTTCTTTCCTTCTGGAATGGCTTCCGTCCTTATCTTTTTGGCAGGTTTCTATGCCATAGTTTCCTCTGTTGATGCTTATGCAGGTGGAGGCTGGACTGGGGCTCACGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGCAACTTATACAGCCAAGGATATGGAACAAACACTGCTGCTTTGAGTACGGCTCTATTCAACAATGGCTTGAGCTGTGGCTCTTGCTACGAGATTAGGTGCGCCAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCCCTTCCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTTCAACACTTTGATCTCTCTCAACCTGTATTCCAACACATTGCTCAGTACAGAGCAGGAATTGTGCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGAGGAGGCATAAGGTTCACCATCAATGGGCACTCCTACTTCAACTTAGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACGCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGTAACAGCTACCTCAATGGTCAAAGCCTCTCCTTCAAGGTAACCACCAGCGACGGCCGAACCGTCATCTCCAACAACGCTGTCCCAGCTGGCTGGTCCTTTGGACAGACTTACAATGGTGCCCAATTCTGA 891 49.38 MDPLTKEYTSTPALFPPSEFLYIVPSTLLISHSSASFCSFISYFFPSGMASVLIFLAGFYAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYNGAQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33929896 33932778 + ClG42_05g0261600.10 Clacu05g2616 250363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2616 296 SUPERFAMILY PHL pollen allergen 201 292 IPR036749 -
Clacu05g2616 296 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 214 293 IPR007117 -
Clacu05g2616 296 Gene3D - 204 296 IPR036749 -
Clacu05g2616 296 FunFam Expansin 204 296 - -
Clacu05g2616 296 CDD DPBB_EXPA_N 73 199 - -
Clacu05g2616 296 FunFam Expansin 63 200 - -
Clacu05g2616 296 PRINTS Expansin signature 162 179 IPR002963 GO:0009664(InterPro)
Clacu05g2616 296 PRINTS Expansin signature 203 215 IPR002963 GO:0009664(InterPro)
Clacu05g2616 296 PRINTS Expansin signature 143 153 IPR002963 GO:0009664(InterPro)
Clacu05g2616 296 PRINTS Expansin signature 131 142 IPR002963 GO:0009664(InterPro)
Clacu05g2616 296 PRINTS Expansin signature 215 236 IPR002963 GO:0009664(InterPro)
Clacu05g2616 296 PRINTS Expansin signature 104 118 IPR002963 GO:0009664(InterPro)
Clacu05g2616 296 PRINTS Expansin signature 279 295 IPR002963 GO:0009664(InterPro)
Clacu05g2616 296 PRINTS Expansin signature 179 192 IPR002963 GO:0009664(InterPro)
Clacu05g2616 296 PRINTS Expansin signature 250 271 IPR002963 GO:0009664(InterPro)
Clacu05g2616 296 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 92 204 IPR007112 -
Clacu05g2616 296 PANTHER EXPANSIN-A15 57 296 IPR002963 GO:0009664(InterPro)
Clacu05g2616 296 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576(InterPro)
Clacu05g2616 296 PRINTS Expansin/Lol pI family signature 279 293 IPR007118 GO:0005576(InterPro)
Clacu05g2616 296 PRINTS Expansin/Lol pI family signature 187 203 IPR007118 GO:0005576(InterPro)
Clacu05g2616 296 PRINTS Expansin/Lol pI family signature 73 88 IPR007118 GO:0005576(InterPro)
Clacu05g2616 296 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576(InterPro)
Clacu05g2616 296 PRINTS Expansin/Lol pI family signature 113 131 IPR007118 GO:0005576(InterPro)
Clacu05g2616 296 Pfam Lytic transglycolase 109 194 IPR009009 -
Clacu05g2616 296 Gene3D - 61 200 IPR036908 -
Clacu05g2616 296 Pfam Expansin C-terminal domain 205 282 IPR007117 -
Clacu05g2616 296 SUPERFAMILY Barwin-like endoglucanases 73 222 IPR036908 -
Clacu05g2616 296 SMART dpbb_1 109 194 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0145 Clacu-Chr3:1596699 Clacu05g2616 Clacu-Chr5:33929896 3.10E-66 dispersed
Clacu05g2616 Clacu-Chr5:33929896 Clacu07g0524 Clacu-Chr7:6700707 6.10E-111 dispersed
Clacu08g1577 Clacu-Chr8:25590918 Clacu05g2616 Clacu-Chr5:33929896 4.40E-97 transposed
Clacu11g1130 Clacu-Chr11:15813750 Clacu05g2616 Clacu-Chr5:33929896 5.10E-49 transposed
Clacu11g1131 Clacu-Chr11:15815058 Clacu05g2616 Clacu-Chr5:33929896 1.50E-16 transposed
Clacu04g1275 Clacu-Chr4:26817804 Clacu05g2616 Clacu-Chr5:33929896 2.60E-91 wgd
Clacu05g2616 Clacu-Chr5:33929896 Clacu06g1720 Clacu-Chr6:27843631 2.80E-116 wgd
Clacu05g2616 Clacu-Chr5:33929896 Clacu09g1856 Clacu-Chr9:33317282 3.10E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2616 - - - 0.0