Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2617 ATGGGAAGGGTAAAATTGAAGATTAAGAGATTGGAGAATACAAACGGACGCCAAGCAACTTATTCTAAAAGAAAGAACGGCATTATGAAGAAGGCTAAGGAATTATCTATTTTATGTGACATTGATATTATTCTTCTCATGTTTTCACCCACCGGAAAGCCTAATCTTTGTTGTGGCAAACGCAGCATTGAGGAGGTAATCGCTAGGTTTGCTCAACAAACTCCCCAGGAAAGGGCAAAAAGGAAAATGGAAAGCCTTGATTCACTGCGGAAAACTTTCAAGAAATTGGACCACGATGTCAACATTCAAGATTTCCTAGGAACAAGTAGCCAAACGATTGAGGATCTGGCTGGCCAAGCAAAGTTATTGAGGACCCAACTTTCTGAAGTTCATCAGAGATTAAGCTATTGGAGCAACCCTGACAAGATAAACAATGTGGATCACTTGGCCCAAATGGAGGATTCGCTGAGAGAATCACTTAATCAAGTTCGATTGCATAAGGAAAATCTGCAGAAGCATCCTCCAGTACCATTAGAGTTCACTAATCAGGATGGAATGGATCTACCTTTCAATATGAGTGTTGAGCAACAACTTCAACAACTTCAACACTTCTCTTGGATTCCTAGTGATAATCAAAATATAGTTTTACACGACGATCCAAACTTCGTTCTCCATCGGGATGTGGAGTGTTCTGCAAGTTCCTCCTTTGCTAGTTACCCTGGTTATTTCGGCACGGGTCGAAGTCCGGAGATTTCAAATCCTGGACAAGAAAATGGCGTCCTTCCTGAACTAAGCAGAACAGAACCTCTAAGGCCTCAACCAGGAGGGCAAAATTCCTACATGTCTTATAATGTTAACTTTTTTAATGACCCCAGATTTCAACCTGCAGCAGAGATGAACCTGCCAACGATCGCTTGTTTCCTTAATATAGTAATTCTGGAACAGTTGATCGCGTACCTGATAGCTTGA 969 41.38 MGRVKLKIKRLENTNGRQATYSKRKNGIMKKAKELSILCDIDIILLMFSPTGKPNLCCGKRSIEEVIARFAQQTPQERAKRKMESLDSLRKTFKKLDHDVNIQDFLGTSSQTIEDLAGQAKLLRTQLSEVHQRLSYWSNPDKINNVDHLAQMEDSLRESLNQVRLHKENLQKHPPVPLEFTNQDGMDLPFNMSVEQQLQQLQHFSWIPSDNQNIVLHDDPNFVLHRDVECSASSSFASYPGYFGTGRSPEISNPGQENGVLPELSRTEPLRPQPGGQNSYMSYNVNFFNDPRFQPAAEMNLPTIACFLNIVILEQLIAYLIA 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33934204 33937687 - ClG42_05g0261700.10 Clacu05g2617 250364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2617 322 MobiDBLite consensus disorder prediction 247 276 - -
Clacu05g2617 322 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g2617 322 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g2617 322 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g2617 322 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g2617 322 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g2617 322 Coils Coil 149 169 - -
Clacu05g2617 322 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
Clacu05g2617 322 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g2617 322 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Clacu05g2617 322 Gene3D - 14 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g2617 322 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g2617 322 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2617 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2617 Clacu-Chr5:33934204 Clacu11g1780 Clacu-Chr11:29023710 1.50E-14 dispersed
Clacu07g0944 Clacu-Chr7:23442786 Clacu05g2617 Clacu-Chr5:33934204 3.70E-14 transposed
Clacu04g1277 Clacu-Chr4:26822837 Clacu05g2617 Clacu-Chr5:33934204 1.90E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006439 2 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47785 PF00319 SRF-TF 2.00E-19 No_clan Clacu TF