Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2632 ATGGTCATCTCTTACAGAGAATGCCTAAAGAATCACGCCGCCACTGTCGGTGGCCACGCCCTCGACGGTTGCGGCGAGTTTATGCCCTCCGTTACCTCCACACCCGCCGATCCCACTTCGCTAAATTGCGCCGCCTGTGGTTGCCATCGTAACTTCCACCGCCGTGAACCGGACGATCCTTGGCCCAACCGTCGTTACTACCCATATCGCCTCTGTGCACCGCCGTCCCCGAGGTCGAGCCCAGTCAAATCGCAAAGCCCATCCTCGCCGATCCCTCTACCAATCGCCCATATCCCACCGCCAGTCCAGTTCTCCGGCCCGCATATGTTGGTGGCATTGAGCACCGGAGCGCCGGCGGAGGAGGAATTGAGGAGAAAACAGAGGAAGAGAAAGAGGACGAAATTCAGCGGGGAGCAGAAGGAAAAGATGCAATTATTCTCAGAGAAAATTGGATGGAAAATTGGGAAAAGTGAGGAAAGGTTAGTGGAGGAATTCTGCAAAGAAATTGGGATCGGAAAACGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGGAAAACAACACAGAAAAACAGAGCTCCTCAGAGTAGCGAACAAAATGGTGGAAATGACTCAAAACAGAGCACATAG 639 52.58 MVISYRECLKNHAATVGGHALDGCGEFMPSVTSTPADPTSLNCAACGCHRNFHRREPDDPWPNRRYYPYRLCAPPSPRSSPVKSQSPSSPIPLPIAHIPPPVQFSGPHMLVALSTGAPAEEELRRKQRKRKRTKFSGEQKEKMQLFSEKIGWKIGKSEERLVEEFCKEIGIGKRVLRVWMHNNKYMGGKTTQKNRAPQSSEQNGGNDSKQST 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34000212 34000850 + ClG42_05g0263200.10 Clacu05g2632 250379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2632 212 SUPERFAMILY Homeodomain-like 121 186 IPR009057 -
Clacu05g2632 212 NCBIfam homeobox domain, ZF-HD class 128 185 IPR006455 -
Clacu05g2632 212 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 184 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Clacu05g2632 212 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Clacu05g2632 212 MobiDBLite consensus disorder prediction 186 212 - -
Clacu05g2632 212 MobiDBLite consensus disorder prediction 117 141 - -
Clacu05g2632 212 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
Clacu05g2632 212 Pfam ZF-HD protein dimerisation region 3 57 IPR006456 -
Clacu05g2632 212 Gene3D - 115 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2632 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2632 Clacu-Chr5:34000212 Clacu11g0158 Clacu-Chr11:1184217 1.80E-32 dispersed
Clacu10g1493 Clacu-Chr10:28111303 Clacu05g2632 Clacu-Chr5:34000212 4.90E-44 wgd
Clacu04g1288 Clacu-Chr4:26895699 Clacu05g2632 Clacu-Chr5:34000212 7.00E-14 wgd
Clacu05g2632 Clacu-Chr5:34000212 Clacu06g1730 Clacu-Chr6:27903280 4.50E-15 wgd
Clacu05g2632 Clacu-Chr5:34000212 Clacu09g1867 Clacu-Chr9:33415414 1.10E-42 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1304 . 55 246 ZF-HD Transcription Factor Family AT5G65410 51.2 2.5e-45 179.5
Clacu08g1304 . 55 242 ZF-HD Transcription Factor Family AT4G24660 55.0 1.0e-49 193.7
Clacu01g1917 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.9e-47 185.7
Clacu10g0865 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.8e-41 166.4
Clacu11g0158 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.5e-51 200.3
Clacu11g0158 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 8.6e-55 211.1
Clacu01g2019 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.1e-50 195.7
Clacu10g1493 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.8e-51 198.7
Clacu09g1867 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.0e-51 198.4
Clacu10g1493 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Clacu09g1867 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Clacu09g1867 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Clacu10g1493 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Clacu05g2632 . 1 192 ZF-HD Transcription Factor Family AT1G69600 50.5 7.9e-48 187.6
Clacu09g1867 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Clacu11g0158 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.5e-51 200.3
Clacu08g1304 . 55 242 ZF-HD Transcription Factor Family AT4G24660 55.0 1.0e-49 193.7
Clacu01g1917 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.9e-47 185.7
Clacu10g0865 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.8e-41 166.4
Clacu09g1867 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Clacu10g1493 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Clacu01g2019 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.1e-50 195.7
Clacu08g1304 . 55 246 ZF-HD Transcription Factor Family AT5G65410 51.2 2.5e-45 179.5
Clacu05g2632 . 1 192 ZF-HD Transcription Factor Family AT1G69600 50.5 7.9e-48 187.6
Clacu09g1867 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Clacu10g1493 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.8e-51 198.7
Clacu09g1867 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.0e-51 198.4
Clacu11g0158 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 8.6e-55 211.1
Clacu10g1493 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Clacu09g1867 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013584 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47789 PF04770 ZF-HD_dimer 8.20E-29 No_clan Clacu TF