Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2632 ATGGTCATCTCTTACAGAGAATGCCTAAAGAATCACGCCGCCACTGTCGGTGGCCACGCCCTCGACGGTTGCGGCGAGTTTATGCCCTCCGTTACCTCCACACCCGCCGATCCCACTTCGCTAAATTGCGCCGCCTGTGGTTGCCATCGTAACTTCCACCGCCGTGAACCGGACGATCCTTGGCCCAACCGTCGTTACTACCCATATCGCCTCTGTGCACCGCCGTCCCCGAGGTCGAGCCCAGTCAAATCGCAAAGCCCATCCTCGCCGATCCCTCTACCAATCGCCCATATCCCACCGCCAGTCCAGTTCTCCGGCCCGCATATGTTGGTGGCATTGAGCACCGGAGCGCCGGCGGAGGAGGAATTGAGGAGAAAACAGAGGAAGAGAAAGAGGACGAAATTCAGCGGGGAGCAGAAGGAAAAGATGCAATTATTCTCAGAGAAAATTGGATGGAAAATTGGGAAAAGTGAGGAAAGGTTAGTGGAGGAATTCTGCAAAGAAATTGGGATCGGAAAACGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGGAAAACAACACAGAAAAACAGAGCTCCTCAGAGTAGCGAACAAAATGGTGGAAATGACTCAAAACAGAGCACATAG 639 52.58 MVISYRECLKNHAATVGGHALDGCGEFMPSVTSTPADPTSLNCAACGCHRNFHRREPDDPWPNRRYYPYRLCAPPSPRSSPVKSQSPSSPIPLPIAHIPPPVQFSGPHMLVALSTGAPAEEELRRKQRKRKRTKFSGEQKEKMQLFSEKIGWKIGKSEERLVEEFCKEIGIGKRVLRVWMHNNKYMGGKTTQKNRAPQSSEQNGGNDSKQST 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34000212 34000850 + ClG42_05g0263200.10 Clacu05g2632 250379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2632 212 SUPERFAMILY Homeodomain-like 121 186 IPR009057 -
Clacu05g2632 212 NCBIfam homeobox domain, ZF-HD class 128 185 IPR006455 -
Clacu05g2632 212 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 184 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Clacu05g2632 212 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Clacu05g2632 212 MobiDBLite consensus disorder prediction 186 212 - -
Clacu05g2632 212 MobiDBLite consensus disorder prediction 117 141 - -
Clacu05g2632 212 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
Clacu05g2632 212 Pfam ZF-HD protein dimerisation region 3 57 IPR006456 -
Clacu05g2632 212 Gene3D - 115 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2632 Clacu-Chr5:34000212 Clacu11g0158 Clacu-Chr11:1184217 1.80E-32 dispersed
Clacu10g1493 Clacu-Chr10:28111303 Clacu05g2632 Clacu-Chr5:34000212 4.90E-44 wgd
Clacu04g1288 Clacu-Chr4:26895699 Clacu05g2632 Clacu-Chr5:34000212 7.00E-14 wgd
Clacu05g2632 Clacu-Chr5:34000212 Clacu06g1730 Clacu-Chr6:27903280 4.50E-15 wgd
Clacu05g2632 Clacu-Chr5:34000212 Clacu09g1867 Clacu-Chr9:33415414 1.10E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47789 PF04770 ZF-HD_dimer 8.20E-29 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2632 - - - 0.0