Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2640 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAACAACAACAGCCATGTTCCTCCTCCGCAAACAACGGAGGAACAACAACGACGACAATAACAACAACTCCAAATCCAAATCTTCAATCTTCTTCTTCACCCAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACAAAAGTAGATGGCCGTGGCCGTCGGATTCGTATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGCCACAAGTCCGATGGCGAAACAATTGAGTGGCTTCTACAACAAGCTGAGCCTGCCGTTATTGCTGCAACCGGTACTGGTACCATTCCAGCTAATTTCACTTCTCTTAATATCTCCCTCCGTAGCTCCGGCTCCACCATTTCCGCTCCTTCTCATCTTCGGACGAGCTATTTTAGTCCCACGCAATTCGCCGTCAGAACAAGATCCGATCTTTGGGACAGAAACAACAATCATAATCATAATCTCGTGGATGATTCCTCTACGTTCTTGAATTTCAACGCTCCTAATTATGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGACGTCACCGAGGCGGGAAAGAAACGGCGGTCGGAGCAGTCAGAATCATCGTCGGATAATTATTTGGTTCAAACGAGTACCGGGTCAATTCCAGCGAGTCAAAGCAGTCCATTGCCGGCGACATTTTGGATGGTGACGAATCCAAGCAATCAAGGGAGTGATCCGATGTGGACATTTCCGTCGGTGGGTAACAGCAGCATGTTGAGAGGGGCGGGGGCGGGTGGTGGCGGCGGCGGCGGCGGCGGGGGATTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGACAACAGTTGGGGACAGGAATCGGCAGTGGCGGTGGTCCGGCGACGGAGAGCCACTTGGGGATGTTGGCTGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTTTCAGAATCTCCAACATCAAATAATCCTGATCAATCATAG 1068 49.72 MIMDGENGIRRPNFPLQLLEKKKEEQQQPCSSSANNGGTTTTTITTTPNPNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNHNHNLVDDSSTFLNFNAPNYVNVFKQDQGGIDVTEAGKKRRSEQSESSSDNYLVQTSTGSIPASQSSPLPATFWMVTNPSNQGSDPMWTFPSVGNSSMLRGAGAGGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGSGGGPATESHLGMLAALSAYRTTMPGLSVSESPTSNNPDQS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34054604 34055671 + ClG42_05g0264000.10 Clacu05g2640 250387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2640 355 MobiDBLite consensus disorder prediction 223 241 - -
Clacu05g2640 355 ProSiteProfiles TCP domain profile. 68 122 IPR017887 -
Clacu05g2640 355 MobiDBLite consensus disorder prediction 28 62 - -
Clacu05g2640 355 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 33 323 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Clacu05g2640 355 MobiDBLite consensus disorder prediction 1 80 - -
Clacu05g2640 355 Pfam TCP family transcription factor 67 180 IPR017887 -
Clacu05g2640 355 MobiDBLite consensus disorder prediction 211 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2640 Clacu-Chr5:34054604 Clacu06g0017 Clacu-Chr6:412937 2.30E-27 dispersed
Clacu11g1530 Clacu-Chr11:26442793 Clacu05g2640 Clacu-Chr5:34054604 9.20E-38 transposed
Clacu04g1303 Clacu-Chr4:26984901 Clacu05g2640 Clacu-Chr5:34054604 4.70E-44 wgd
Clacu05g2640 Clacu-Chr5:34054604 Clacu06g1733 Clacu-Chr6:27941806 4.50E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47791 PF03634 TCP 3.90E-38 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2640 - - - 0.0