Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2645 ATGGGAAATGGGAAACGCCCGTCAGATCATGATGGCGATGAGTTTGTTAGAACCTCTAGTTCTTGTGGTAGAAACGTCAGACCTCGATCTTCAAGAGATCATCGTCCAAATGATGAGTCTGATTCTGGGGATAGTTCTGATTCCGGTTCTCTGATCTCTTCCATTGGTCGGGACAACTCTATTAATTGCTTAATTCGCTGCTCCAGGTCTGATTATGGTTCGATTGCATCCTTGAATCGAAGTTTCCGTTCGTTAATTCGTAGTGGAGAGCTTTACAAACTGAGGCGTTTGAACGGTGTGATTGAGCACTGGGTTTATTTCTCTTGCCATCTTCTGGAGTGGGAAGCTTTTGATCCAATTCAACGCAGGTGGATGCATTTGCCAAGGATGGATTCGAATGAATGTTTCATGTGCTCGGATAAAGAATCCTTGGGAGTGGGAACTGACCTTCTTGTTTTTGGTAAGGATTTAAATTCCCATGTCACTTATAGATATAGTATATTGACAAATTCCTGGTGTCCTGGAGTGAGTATGAACGATCCCAGATGCTTGTTTGGGTCTGCTAGTAAAGGGGAGATAGCAATTTTAGCTGGTGGTTGTGATTCTAATGGCAACATTCTTAACACTGCTGAGCTTTACAATTCCGAGACTAAAACTTGGGTGACGCTTCCAAATATGACTAAACCAAGGAAGCTTTGTTCTGGGGTGTTCATGGACAAGAAATTCTATGTTATTGGTGGAGTTGGAGGAAGTGAGGCTAAGGTTCTTACATGTGGTGAAGAGTACGATTTAGAAACTCGAAAATGGACTGAAATTCCCAATATGTCGCCTGGCCGTAGTGCTGCTGCTAGGGACGGTGATATGCCGGCCGCAGCTGAAGCACCGCCTCTTCTTGCTGTGGTGAATAATGAACTCTATGCTGCAGATCACACTGACATGGAGGTTAGGAAATATGACAAACAAAGAAGAGAATGGTTTACAGTTGGGAGGTTGCCTGAAAGAGCAGTTTCAACTAATGGTTGGGGGCTTGCATTTAGAGCGTGCGGCGATAGGCTTATTGTTATTGGTGGACCAAGGGCCATGGGGGAAGGTTTTATAGAGCTTAATTCATGGGTTCCAAGTGAAGGCCCTCCAAGGTGGGATTTGCTTGCAAGGAAACCATCTGCAAATTTTGTGTATAACTGTGCTGTGATGGGATGCTGA 1203 44.39 MGNGKRPSDHDGDEFVRTSSSCGRNVRPRSSRDHRPNDESDSGDSSDSGSLISSIGRDNSINCLIRCSRSDYGSIASLNRSFRSLIRSGELYKLRRLNGVIEHWVYFSCHLLEWEAFDPIQRRWMHLPRMDSNECFMCSDKESLGVGTDLLVFGKDLNSHVTYRYSILTNSWCPGVSMNDPRCLFGSASKGEIAILAGGCDSNGNILNTAELYNSETKTWVTLPNMTKPRKLCSGVFMDKKFYVIGGVGGSEAKVLTCGEEYDLETRKWTEIPNMSPGRSAAARDGDMPAAAEAPPLLAVVNNELYAADHTDMEVRKYDKQRREWFTVGRLPERAVSTNGWGLAFRACGDRLIVIGGPRAMGEGFIELNSWVPSEGPPRWDLLARKPSANFVYNCAVMGC 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34101153 34102355 - ClG42_05g0264500.10 Clacu05g2645 250392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2645 400 MobiDBLite consensus disorder prediction 1 53 - -
Clacu05g2645 400 MobiDBLite consensus disorder prediction 27 42 - -
Clacu05g2645 400 FunFam F-box/kelch-repeat protein SKIP11 97 385 - -
Clacu05g2645 400 MobiDBLite consensus disorder prediction 1 17 - -
Clacu05g2645 400 Gene3D - 102 384 IPR015915 GO:0005515(InterPro)
Clacu05g2645 400 SMART kelc_smart 193 240 IPR006652 GO:0005515(InterPro)
Clacu05g2645 400 SMART kelc_smart 241 286 IPR006652 GO:0005515(InterPro)
Clacu05g2645 400 SMART kelc_smart 149 192 IPR006652 GO:0005515(InterPro)
Clacu05g2645 400 Pfam Kelch motif 181 227 IPR006652 GO:0005515(InterPro)
Clacu05g2645 400 Pfam Kelch motif 229 276 IPR006652 GO:0005515(InterPro)
Clacu05g2645 400 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 40 400 IPR052439 GO:0005634(PANTHER)
Clacu05g2645 400 SUPERFAMILY Kelch motif 111 397 IPR015915 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2645 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2167 Clacu-Chr2:34808938 Clacu05g2645 Clacu-Chr5:34101153 2.80E-83 dispersed
Clacu03g0227 Clacu-Chr3:2548450 Clacu05g2645 Clacu-Chr5:34101153 4.40E-82 dispersed
Clacu05g1502 Clacu-Chr5:18443911 Clacu05g2645 Clacu-Chr5:34101153 2.70E-53 dispersed
Clacu05g2645 Clacu-Chr5:34101153 Clacu09g0712 Clacu-Chr9:6189720 4.70E-13 dispersed
Clacu04g1309 Clacu-Chr4:27010908 Clacu05g2645 Clacu-Chr5:34101153 1.00E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g886 . Blo16g01122 . Bda11g01225 Bpe13g01419 Bpe10g00862 Bma14g01637 Bma15g00165 Cmo04g01725 Cmo18g01186 . Cma18g01163 . Car18g01072 . Cpe09g00167 Cpe01g01456 Bhi07g01584 Tan04g1095 . . . . . Cla05g02456 Cam05g2642 Cec05g2675 Cco05g2712 Clacu05g2645 Cmu05g2499 Cre05g2613 Cone13ag0964 Cone19ag0956 Cone6ag0600 Cone9ag0605 Lsi04g00439 Csa05g02435 Chy10g00988 Cme10g00430 Blo06g00901 . Bda07g01463 Bda11g01225 Bpe11g01636 . . Bma06g00678 . . . Cma04g01646 . Car04g01687 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003256 3 4 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 0 1 1 1 1 3 2 1 50