Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2649 ATGATGATGGGAAAGAGGACAAGATTCCGGCCGCAGACGGCGGCGATTGCAGCTCCGGCCACCATGACAAGCAATGGGATGGCTTTTTTCCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTAATTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCTTTTCTAGGAAAACGATCTATGTCATTTTCAGGGGCGGAAATGGTGGAAGAAGGGAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGAAGACTTAACATGGAGCAAGTGAAAACACTTGAGAAAAATTTCGAATTGGGAAATAAACTTGAACCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTGCAGCCAAGACAAATTGCTATTTGGTTTCAAAACAGAAGAGCTCGCTGGAAAACCAAGCAGCTTGAAAAAGACTATGATCTTCTCAAAAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGATCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAATATAAAATTAGACATCTCAAGAACACCAGCCATTGATAGCCCTCATCAGCATCAGCATCAACATCCAACAAATAGGCCTCTTTTTCCCACTTCTTCCTTAAGGCCTCCAGCTTTGGCTCAACTCTTTCAAACCTCTTCAAGATCATCAGATCATCCACCAAAGCAACTTGATAATCATCATCAAATCCCTAAAGAAGAAAGCAGCAGTTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGCTTCTGGCCTTGGTTGGAGCAACAACATTTCAACTGA 966 42.24 MMMGKRTRFRPQTAAIAAPATMTSNGMAFFPANFMLQTSHEDHDHHHHSNSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHPTNRPLFPTSSLRPPALAQLFQTSSRSSDHPPKQLDNHHQIPKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34142026 34144754 + ClG42_05g0264900.10 Clacu05g2649 250396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2649 321 MobiDBLite consensus disorder prediction 239 279 - -
Clacu05g2649 321 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677(InterPro)
Clacu05g2649 321 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
Clacu05g2649 321 FunFam Homeobox-leucine zipper protein ATHB-13 99 166 - -
Clacu05g2649 321 SMART HOX_1 105 166 IPR001356 GO:0003677(InterPro)
Clacu05g2649 321 PRINTS Lambda-repressor HTH signature 133 142 IPR000047 GO:0003677(InterPro)
Clacu05g2649 321 PRINTS Lambda-repressor HTH signature 142 158 IPR000047 GO:0003677(InterPro)
Clacu05g2649 321 MobiDBLite consensus disorder prediction 210 232 - -
Clacu05g2649 321 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 85 302 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Clacu05g2649 321 Pfam Homeodomain 107 160 IPR001356 GO:0003677(InterPro)
Clacu05g2649 321 Gene3D - 99 168 - -
Clacu05g2649 321 MobiDBLite consensus disorder prediction 203 301 - -
Clacu05g2649 321 Coils Coil 154 202 - -
Clacu05g2649 321 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu05g2649 321 Pfam Homeobox associated leucine zipper 162 202 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2649 321 CDD homeodomain 107 163 IPR001356 GO:0003677(InterPro)
Clacu05g2649 321 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2649 Clacu-Chr5:34142026 Clacu10g0858 Clacu-Chr10:17583141 1.90E-25 dispersed
Clacu05g2649 Clacu-Chr5:34142026 Clacu09g1879 Clacu-Chr9:33634933 1.20E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47793 PF00046 Homeodomain 3.30E-15 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2649 K09338 - csv:101221595 565.844