Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2655 ATGTCCATCCTTAGTGCTTCTCCACGCAAACCATTCAATAGAAACTCAGAAATCATTGCATTTACAGATGCCAAGTTTCTGTGGGGCATTTCGTCGAACGCCTTTAGGCTGTTGCTCCATAGACAGAGGCAGGAAAATGGAACTGTTAGAACGAAGGGAGGCCGGGCGAGTGGCTCTACTTTGGATTTTCCCTTTGCTCTTTCTGCTCCTGATCGTGTTCTCGTCACCGGGGAAGTCCCTCTCGTTAAGCCGGTAGAGAAATTGAAATTGAGGTTTCTCTTTGATTTAGTTTCTCAATCCATCAACATCAGTAAAGGCTCTCGCCGCGCTAGGTTACAGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGAGATTTCAAGAGGTTGCAGCAAGATCCACCTGCTGGTATCAGTGGTGCTCCCCAAGACAATAATATCATGCTATGGAATGCTGTTATATTTGGGCCAGATGATACACCATGGGATGGAGGTACGTTTAAGCTTACTCTTCAGTTTACTGAGGATTATCCAAATAAGCCACCAACAGTCCGCTTTGTGTCTAGAATGTTCCACCCTAACATTTATGCCGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAGTGGAGCCCAATCTATGATGTAGCAGCTATACTCACCTCTATTCAGTCGCTGCTGTGTGATCCCAATCCAAACTCTCCGGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAGAATAAGCGTGAGTACAACAGGAGAGGACATGAGAATGTTGTATCGTTTCCTCAGATGCCAGGGCGACAATGTGGACGTGCTCAAGAATGGACCAAAGGCCGATGCCTCAGATTGGCTGCTCTTCCACGTGCTGCGAAGCGGAGAAAGGAATCGGGATTTTCTTTTGAATTCGTTTCTGAATCCATCGAGATCAGCCAAAGTTCTCGGCTCGCCGCGCTAGGTTACGGTTTAGGGCAGAGATCCAGGGGTTTTGTTTACGGCGTGGGTACGGGAAAGGATGTATCGACGTGCAACGAGCTGGTGTTTAGTTTCGTTAAGGCATGGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGGGACTTTAAGAGGTTGCAACAAGATCCACCTGCCGGTATCAGTGGTGCTCCCCAAGACAATAATATCATGCTTTGGAATGCTGTTATATTTGGGCCAGATGATACACCTTGGGATGGAGGTACGTTTAAGCTGACCCTGCAGTTCACCGAGGATTATCCAAATAAGCCACCGACAGTCCGCTTTGTGTCTAGAATGTTCCACCCCAATATTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAATGGAGCCCAATCTATGATGTAGCAGCTATACTTACCTCTATTCAGTCGTTGCTGTGCGACCCCAATCCAAATTCTCCTGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAGAACAAGCGTGAGTACAACAGGAGAGTACGCGAGATCGTGGAACAGAGTTGGACTGCTGATTAG 1536 47.07 MSILSASPRKPFNRNSEIIAFTDAKFLWGISSNAFRLLLHRQRQENGTVRTKGGRASGSTLDFPFALSAPDRVLVTGEVPLVKPVEKLKLRFLFDLVSQSINISKGSRRARLQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRGHENVVSFPQMPGRQCGRAQEWTKGRCLRLAALPRAAKRRKESGFSFEFVSESIEISQSSRLAALGYGLGQRSRGFVYGVGTGKDVSTCNELVFSFVKAWPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34193271 34205976 - ClG42_05g0265500.10 Clacu05g2655 250402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2655 511 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 436 451 IPR023313 -
Clacu05g2655 511 FunFam Ubiquitin-conjugating enzyme E2 2 360 507 - -
Clacu05g2655 511 FunFam Ubiquitin-conjugating enzyme E2 2 117 263 - -
Clacu05g2655 511 CDD UBCc 366 504 IPR000608 -
Clacu05g2655 511 Gene3D Ubiquitin Conjugating Enzyme 358 507 IPR016135 -
Clacu05g2655 511 SMART ubc_7 366 509 - -
Clacu05g2655 511 SMART ubc_7 123 266 - -
Clacu05g2655 511 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 363 509 IPR000608 -
Clacu05g2655 511 Gene3D Ubiquitin Conjugating Enzyme 94 285 IPR016135 -
Clacu05g2655 511 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 361 509 IPR050113 GO:0000209(PANTHER)|GO:0006281(PANTHER)|GO:0016574(PANTHER)|GO:0043161(PANTHER)|GO:0061631(PANTHER)
Clacu05g2655 511 SUPERFAMILY UBC-like 357 509 IPR016135 -
Clacu05g2655 511 Pfam Ubiquitin-conjugating enzyme 367 503 IPR000608 -
Clacu05g2655 511 Pfam Ubiquitin-conjugating enzyme 124 257 IPR000608 -
Clacu05g2655 511 CDD UBCc 123 259 IPR000608 -
Clacu05g2655 511 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 193 208 IPR023313 -
Clacu05g2655 511 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 120 266 IPR000608 -
Clacu05g2655 511 SUPERFAMILY UBC-like 110 259 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2655 K10573 - - csv:101222773 320.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0819 Clacu-Chr2:9438783 Clacu05g2655 Clacu-Chr5:34193271 1.90E-28 dispersed
Clacu03g0169 Clacu-Chr3:1822636 Clacu05g2655 Clacu-Chr5:34193271 9.90E-26 dispersed
Clacu05g2284 Clacu-Chr5:31205251 Clacu05g2655 Clacu-Chr5:34193271 4.50E-27 dispersed
Clacu05g2655 Clacu-Chr5:34193271 Clacu09g1043 Clacu-Chr9:9925501 1.60E-34 dispersed
Clacu10g1835 Clacu-Chr10:32035443 Clacu05g2655 Clacu-Chr5:34193271 3.40E-06 dispersed
Clacu05g2655 Clacu-Chr5:34193271 Clacu05g1018 Clacu-Chr5:8999712 1.20E-34 transposed
Clacu05g2655 Clacu-Chr5:34193271 Clacu01g0064 Clacu-Chr1:583288 1.20E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g865 Blo01g00420 Blo16g01129 Bda01g02169 Bda11g01230 Bpe13g01427 . . . Cmo04g01716 Cmo18g01194 . Cma18g01169 . Car18g01078 . Cpe09g00159 Cpe01g01450 Bhi07g01596 Tan04g1110 . Lac13g0292 . . . Cla05g02464 Cam05g2651 Cec05g2686 Cco05g2720 Clacu05g2655 Cmu05g2507 Cre05g2623 Cone13ag0975 Cone19ag0965 Cone6ag0608 Cone9ag0612 Lsi04g00451 Csa05g02426 Chy10g00980 Cme10g00439 . . . Bda11g01230 . Bpe02g02356 Bma01g00086 Bma06g00663 . . . Cma04g01638 . Car04g01679 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71