Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2657 ATGGCTATGCACCGGCTACTGCTAACATTGTCCTTGCTGGCAACTACCGCATTTGCTGACATTGGAAACTTTGATGACTACTGGAAAGCACGTGCCGTGGACGCCGAACAAGCCGCCGCCGCCGCCTTTGAGCCTAATCCTGAAACCGTCACCAACTCCTTCAATGCCGAAGTAGGCCAGTTATTGAGTGGAAGCAACAGTACGAGGAGGAATTTGAAGAAATATACAGGGCCATGTCGAGCTACTAATCCCATCGATCGGTGCTGGAGATGCGACCCCAATTGGGCCAAGAACCGGAAGAAGCTAGCTGATTGTGTTCTGGGTTTTGGCCGCAAGACCATTGGTGGAAAGTTGGGTCCATACTACGTCGTGAACGACTCGTCAGATTCGGACCTCATGAACCCGAAACCTGGGACTCTTCGTCATGCTGTGATCCAAAAGGGACCTCTGTGGATCATCTTCTCTACCAACATGGCCATTAGGCTCACGCAGGAGCTCATCATGACCAGCGACAAGACCATTGATGCAAGAGGGGCTAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTACATCAAAAATGTCATCATCCACGGCCTTCGTATCCATCACATTGTTGTCGGTTCTGGCGGAATGATTAGAGACGCTGTCGACCACGTGGGTTTGAGGACCATGAGCGATGGTGACGGCATTTCCATCTTCGGTTCCTCCAACGTTTGGATTGACCATGTTTCCATGTCCAGGTGTCATGATGGTCTCATTGATGCCATCATGGGGTCCACTGCCATCACGATATCCAATTGTCACTTCACCCACCATAATGAGGTGATGTTGTTTGGAGCAAGTGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTAGCATTCAACCACTTTGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCATGTTGTGAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAGCATCCCACCATTATCAGCCAGGGAAATCGCTTCATTGCTCCTCCCAATGTATATGCTAAAGAGGTGACAAAGAGGGAGTACTCGCCGGAGGAAGTGTGGAAAAGCTGGACATGGAGATCAGAGGGAGACTTGATGATGAATGGAGCATTCTTTGTTACCTCCGGCGATCAAAGCAAGAGAAGACCCTTCTCAAGGATGGATATGATCTCCTATAAACCGGGGACATACGTTACAAGAATGACACGTTTTGCAGGCGCACTCGCCTGCTTCGTTGGTCGCCCTTGCTAA 1299 49.73 MAMHRLLLTLSLLATTAFADIGNFDDYWKARAVDAEQAAAAAFEPNPETVTNSFNAEVGQLLSGSNSTRRNLKKYTGPCRATNPIDRCWRCDPNWAKNRKKLADCVLGFGRKTIGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLTQELIMTSDKTIDARGANVQIAYGAGITLQYIKNVIIHGLRIHHIVVGSGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSRCHDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNVYAKEVTKREYSPEEVWKSWTWRSEGDLMMNGAFFVTSGDQSKRRPFSRMDMISYKPGTYVTRMTRFAGALACFVGRPC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34212655 34214213 - ClG42_05g0265700.10 Clacu05g2657 250404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2657 432 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Clacu05g2657 432 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Clacu05g2657 432 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Clacu05g2657 432 PRINTS Pollen allergen Amb family signature 403 426 IPR018082 -
Clacu05g2657 432 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Clacu05g2657 432 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Clacu05g2657 432 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Clacu05g2657 432 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Clacu05g2657 432 SUPERFAMILY Pectin lyase-like 83 423 IPR011050 -
Clacu05g2657 432 SMART amb_all 157 354 IPR002022 -
Clacu05g2657 432 Pfam Pectate lyase 170 348 IPR002022 -
Clacu05g2657 432 Gene3D - 82 425 IPR012334 -
Clacu05g2657 432 PANTHER PECTATE LYASE 18-RELATED 40 429 IPR045032 GO:0030570(InterPro)
Clacu05g2657 432 Pfam Pectate lyase, N terminus 21 72 IPR007524 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2657 Clacu-Chr5:34212655 Clacu08g1907 Clacu-Chr8:28244138 4.10E-132 dispersed
Clacu08g1053 Clacu-Chr8:20524947 Clacu05g2657 Clacu-Chr5:34212655 3.90E-191 transposed
Clacu01g1517 Clacu-Chr1:27251539 Clacu05g2657 Clacu-Chr5:34212655 1.20E-176 wgd
Clacu10g1478 Clacu-Chr10:27896404 Clacu05g2657 Clacu-Chr5:34212655 3.30E-190 wgd
Clacu04g1317 Clacu-Chr4:27068208 Clacu05g2657 Clacu-Chr5:34212655 5.50E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2657 K01728 - csv:101206497 815.453