Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2659 ATGTCAGGCCCGGCCACCGTTTTGCTTATGTCCGGTGCTCCGCCACCACTGGATCTATCCTCCACTTCGCAAACAGAGCTTCTCCGGCTCGATCGCCGATCAGGTAGACCCAAGGACGGCTTGTTTTCACCGAGTTATCGTTTATATTCTCAATTTCTATACTCTGTAGATGCGACAATGAATTTTCTACTCAGATCTACTCATACCGTGCCTCCAGAGCGGCCATCTGTTCAAGAAACTCCTCCTCCAGCTGCCTATTACGCGCCAAAGCCAGCGGTAACTTTGGAAGGTCTGATTTCTGAAGATCCATTTCCACAATATTCCGTTATTGATGATAATGACGAGGAGGCTGATGCATCTGGCGGTGAAAATGGAAGTATTGCTGGTCATAGGGAGAGAAGCAGCCGTGCTGGTGTAGTGAAGCATTCTGATGTTTCTGAGGAAGAAGGGTGGATTACCATTCCATGCAAGGGTCTTCCTTGTGATTGGAAAAATGCATCAGATATACATTCATTATGCAGTATGGACCGATCTTTTGTTTTCCCAGGTGAACAAATATGTATCTTGGCATGTTTATCTGCTTATAAACAGGATACGGAAACCATAACTCCTTTTAAAGTCGCAGCAGTTATGTGTAAAAATGGAAAATCGCATAGTCCAAAAAAACAAAATGAAAACATGGATGATGGAACTAATTCCACAAATGGGGAAAGACATAGTACAGATCAGAATGGTGAAAATCTATTAAGTGAGAGGATTGACCCATCAGAGGATGTTTCTGCCAGTGAATCTCTTCTCAGAATGGAAGATCACAGACGACAAACAGAAACGTTGTTGCAACGATTTGAGAACTCTCACTTTTTTGTAAGAATTGCCGAGTCTAATGATCCCCTTTGGTCAAAAAAAAGATCTGACAATCAAAGTGACTGTGAGATAGTGGGCCAAAACATTGTTAATTCTAGCATAAATGCAGTCATTGATCAAGGAGACTTTGATTCCAACGTCTCTGGTGGCGTAGCAAGAGGTACCTTCAAGTGCTGCTCTCTTTCTGATGGAAGCATAGTGGTGCTTTTACGTGTGAATGTTGGTGTTGACATATTGAGAGATCCTGTATTGGAAATACTTCAATTTGAGAAATACCAAGAGCGGCCAATATCATTTGAGAATCAGGATGGCTTAGGTTATTCAAATCTGGATCCATGTGGAGAACTGTTGAAATGGTTGCTTCCTCTGGATAACACCATTCCTCCTATTCCCCGCCCTTTATCTCCTCCCCGTTTAATTAGCAATGCAGGAATTGGTGGCACGTCTCAGAAGTCTAGTGTTTCTTCTTCATCTGGCTCTCAGCTGTTCTCCTTTGGCCATTTTAGAAGTTACTCTATGTCCTCAATACCTCACAATTCTGCACCACCTCCTGCACCCATTAAAGCTGCAAGTTCAAAGCCAAACTTCGAACTTGAAAATTGGGACCAGTTCTCAACCCAGAAGTCCTCAAAGAGTAAAAGGATTGGAGGCCGTGACCTTTTATCTTTTCGAGGTGTCTCTTTGGAGCAAGAGAGATTTTCTGTCTGTTGTGGACTGAAAGGAATTCACATTCCAGGAAGACGTTGGAGGAGAAAACTTGAAATTGTTCATCCTGTCGAAATCCAGTCTTTTGCTGCTGATTGCAATACAGATGACCTTTTATGCGTTCAAATTAAGAATGTGTCTCCGGCTCATATACCAGATATCATAATTTATATTGATGCTATAACGATTGTTTTTGAAGAGGCATCAAAGGATGGACTCCCATCATCATTACCAATAGCTTGCATAGAAGCAGGAAATGAACACAGCTTACCAAATTTAGCCCTCAGGAGAGATGAGGAGCACTCTTTTATTCTCAAACCAGCAACTTCTATGTGGAGGAATATAAAGGCTTGTGGAGAAAAAATTTCCCAATCATCCCGCTTGCAGGCTGGAAATGCAACATCAAGTTTGTCCCTTACCTCCAAGACTATTGATCAATATGCAATTATGGTAACTTGCCGGTGCAACTATACCGAGTCTAGATTGTTTTTCAAGCAACCAACTAGTTGGCGACCTCGAATTTCAAGGGATCTTATGGTGTCTGTGGCACTATCAGGGGAGACTCCTAAACCCAATGGAATTGTTTCTCACCTTCCCGTTCAGGTTTTGACACTTCAGGCGTCAAATTTAACATCTGAAGATCTGACCATGACGGTTCTTGCTCCAGCTTCATCCACTTCTATTCCATCTGTGATTTCATTGAATTCCTCACCATCATCACCCATGAGTCCGTACATGGTTTTAAATGAAGTTGCTGGAAGGATAGGCAGTGAGAAGTATGGTACATCATTGGAAAGGCCAAGATCAATCCCTACTGTATCTGAGAATCAAAAACACAGTGTTGATTTTGGAGGCCGGACGGTTTCTTTTAAAGATCAATCTTCTCCCATGTCAGATATCATCCCAAGTGCTGGTTTAGGTTGCTCGCATTTGTGGCTCCAGAGTAGAGTTCCATTAGGATGTATTCCTTCTCAATCCACAGCTACCATCAAACTTGAGCTACTTCCCTTGACTGATGGCATAATTACTCTCGACACATTACAGATTGATGTCAAGGAAAAGGGGGCATGGCCAATTGTTTATGCTTATAGCCGCTTGCTATTCTTACATTCAAGTTATTCTGGTTTGCGTACACTTAAGGATATTTTGTATAAGCCCAATCAGAGTGTAGTTAGCTTCAATGCTCGTTCTTCTGAAAAACCTGGAATGATAGATGTTATTTCCTTTCTCGTTCTTACTGACGTTTTCAGCGCAGAGCAATCATCCAAAACAGACCACACTAAATTAAGCCAACTTCAATGGACAGCTATGGAGGTAATCGCTGAAGATGGGAAAGTTGAGTCTCGGGAAGTGAGGGAATCGAAGGGGAAGAAGAAGCAGAAGAACAACAAGGAACAAGTTGAAACTGTGGAAGAGGAGACTGGTTGTTGGATTGCTCTGAGGATTTTTGGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATAAGTGGGACTAGTATCAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACACCTAGAGACATATCTTCAACAAACACAAGTATGAGTAATGCAGAGAGTAATTCATCAACTTCCAAATTAGAAGAGGAACTTAAAATTTCTCCTCATCTACGGAAATTTTCATTCAATGATCTTAAGTTGGCTACAAGGAACTTCAGACCCGAGAGTCTTCTTGGTGAGGGTGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAATGGAACTGCTCCAGTTAAACCTGGCACAGGACTCACTGTTGCTGTTAAAACCCTCAACCATGATGGTCTTCAGGGCCACAAAGAATGGATGGCTGAAGTGAATTTTCTCAGTGATCTCAAACATCCCAACTTGGTCAGACTTATTGGTTACTGCAATGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCTCTACCCCTTCCGTGGTCTATTAGGATGAAAATTGCACTAGGTGCTGCCAAGGGTCTTGCTTTTCTTCATGAGGAAGCAAAAAGACCTGTGATATATCGTGATTTTAAAACATCCAACATCCTATTAGATGCTGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCAAAAGATGGACCCGATGGAGATAAAACCCATGTCTCTACTCGTGTGATGGGAACATATGGCTATGCAGCTCCAGAATACGTTATGACTGGACATCTTACATCCAGGAGTGATGTTTACAGTTTTGGGGTGGTTCTTCTCGAAATGTTAACTGGCAGAAGATCCATGGATAAAAACCGTCCTAATGGTGAGCATAACCTTGTCGAATGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGCTTGATAGATCCTAGGCTTGAAGGTCATTTCTCAATAAAAGGTGCCCAAAAAGCAGTACAATTAGCTGCTCAGTGCCTTAGCCGAGATCAAAAGGTCAGACCTTTGATGAGTGAAGTTGTTGAAGCCTTGAAGCCTCTCCCAAACCTCAAGGATATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCTGACCGCATACGATCCAGCCCAATGGCGAGAAACGGCTACCACACAGCAGCTGGACCGGTTCCAAAGAACGGGCAGCAACTACGCAGCTATTCAGTCGCGAATGGTTCTCATGCTTCTCCATATCATCATCAGCAACCCCATCCATCTCCGAAACCCAATGTCAAAGCCTAA 4344 42.61 MSGPATVLLMSGAPPPLDLSSTSQTELLRLDRRSGRPKDGLFSPSYRLYSQFLYSVDATMNFLLRSTHTVPPERPSVQETPPPAAYYAPKPAVTLEGLISEDPFPQYSVIDDNDEEADASGGENGSIAGHRERSSRAGVVKHSDVSEEEGWITIPCKGLPCDWKNASDIHSLCSMDRSFVFPGEQICILACLSAYKQDTETITPFKVAAVMCKNGKSHSPKKQNENMDDGTNSTNGERHSTDQNGENLLSERIDPSEDVSASESLLRMEDHRRQTETLLQRFENSHFFVRIAESNDPLWSKKRSDNQSDCEIVGQNIVNSSINAVIDQGDFDSNVSGGVARGTFKCCSLSDGSIVVLLRVNVGVDILRDPVLEILQFEKYQERPISFENQDGLGYSNLDPCGELLKWLLPLDNTIPPIPRPLSPPRLISNAGIGGTSQKSSVSSSSGSQLFSFGHFRSYSMSSIPHNSAPPPAPIKAASSKPNFELENWDQFSTQKSSKSKRIGGRDLLSFRGVSLEQERFSVCCGLKGIHIPGRRWRRKLEIVHPVEIQSFAADCNTDDLLCVQIKNVSPAHIPDIIIYIDAITIVFEEASKDGLPSSLPIACIEAGNEHSLPNLALRRDEEHSFILKPATSMWRNIKACGEKISQSSRLQAGNATSSLSLTSKTIDQYAIMVTCRCNYTESRLFFKQPTSWRPRISRDLMVSVALSGETPKPNGIVSHLPVQVLTLQASNLTSEDLTMTVLAPASSTSIPSVISLNSSPSSPMSPYMVLNEVAGRIGSEKYGTSLERPRSIPTVSENQKHSVDFGGRTVSFKDQSSPMSDIIPSAGLGCSHLWLQSRVPLGCIPSQSTATIKLELLPLTDGIITLDTLQIDVKEKGAWPIVYAYSRLLFLHSSYSGLRTLKDILYKPNQSVVSFNARSSEKPGMIDVISFLVLTDVFSAEQSSKTDHTKLSQLQWTAMEVIAEDGKVESREVRESKGKKKQKNNKEQVETVEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPRDISSTNTSMSNAESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKVRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRIRSSPMARNGYHTAAGPVPKNGQQLRSYSVANGSHASPYHHQQPHPSPKPNVKA 1447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34229052 34243425 - ClG42_05g0265900.10 Clacu05g2659 250406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2659 1447 Gene3D Phosphorylase Kinase; domain 1 1048 1175 - -
Clacu05g2659 1447 FunFam Serine/threonine-protein kinase BIK1 1057 1175 - -
Clacu05g2659 1447 MobiDBLite consensus disorder prediction 215 254 - -
Clacu05g2659 1447 MobiDBLite consensus disorder prediction 1413 1434 - -
Clacu05g2659 1447 CDD STKc_IRAK 1096 1373 - -
Clacu05g2659 1447 MobiDBLite consensus disorder prediction 110 144 - -
Clacu05g2659 1447 Gene3D Transferase(Phosphotransferase) domain 1 1176 1391 - -
Clacu05g2659 1447 MobiDBLite consensus disorder prediction 1028 1067 - -
Clacu05g2659 1447 MobiDBLite consensus disorder prediction 1028 1062 - -
Clacu05g2659 1447 FunFam Probable serine/threonine-protein kinase PBL8 1176 1391 - -
Clacu05g2659 1447 PANTHER EXPRESSED PROTEIN 60 880 - -
Clacu05g2659 1447 MobiDBLite consensus disorder prediction 226 250 - -
Clacu05g2659 1447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1219 1231 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2659 1447 SMART serkin_6 1090 1373 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2659 1447 Pfam Protein tyrosine and serine/threonine kinase 1094 1370 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2659 1447 ProSitePatterns Protein kinases ATP-binding region signature. 1096 1128 IPR017441 GO:0005524(InterPro)
Clacu05g2659 1447 SUPERFAMILY Protein kinase-like (PK-like) 1066 1370 IPR011009 -
Clacu05g2659 1447 ProSiteProfiles Protein kinase domain profile. 1090 1376 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2659 1447 MobiDBLite consensus disorder prediction 1400 1447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0691 Clacu-Chr4:20859261 Clacu05g2659 Clacu-Chr5:34229052 8.00E-56 dispersed
Clacu05g2659 Clacu-Chr5:34229052 Clacu06g1227 Clacu-Chr6:23009561 3.70E-137 dispersed
Clacu05g2659 Clacu-Chr5:34229052 Clacu08g1048 Clacu-Chr8:20487691 1.40E-112 wgd
Clacu05g2659 Clacu-Chr5:34229052 Clacu09g1881 Clacu-Chr9:33654410 1.80E-192 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73603 PF07714 PK_Tyr_Ser-Thr 1.20E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2659 - - - 0.0