Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2676 ATGCCTTCTCCATCTCCTTCTTTTACTGTTTCCGCCATTGTTGTCTTCTTCCTTCATCTTTTTCCTCTCTTTCGTGTTGAGTCTTTGAGCTCTTCTTGTCCACCTTTCTCTTCCCAACTTCGTTTCCCTTTTTCCTCTGTTTCTGGTCATGGCCATCCTTCTTTTCAAGTGCGTTGCTCTTCTCCCCACTCTGTTATATCCATTAATGGGATTCCTTTTTCTCTGTTAAGTTTCAATATCACCTCCACCACTCTCCTTCTTTCCCCTCTTCCACTCAATGTCACTCCCACTCTCAAAGAATCGAATCACTCCTGTTTTTCTCTTCGTTCCTCCTCTATTCCCAGCCGTTCGATTGATTTCTCTGGCTCACCGTTTCGAATCTCAGATGGGTATTGTTCTAGACTCTCTCTTCTTCGCCCCTGTTCGCCTCCGCATCTACCCAATTGCAGCCATTGCCCTTGGGAGTGTAATCTCATCAAGAAACCAGTTAATTTGCTCCATGGATGCGGCGTCGAGCGTCAGTCTGTGTCGGAGCAAGGTTGTCAGGAGGAGGTTTTGGAGTATTTGGACAGAATTCTTAGATTGGGGTTTGAAGTGGAGTGGGATAAAGATCAGGACCCTTACTTTATGAAATGTAATGATTGTGAAGCTAAAAAAGGTGTTTGTGGCTTCAATGCTTCAGACCCAGATAGGCAATTCATTTGCTACTATACTCGAACTCGATACTCATACCCTAATAGAATCGCGATTTTGTCCTCCGTCTTCGCTTTGATGTGCTTGTTATTGGTTTTTGCGGTAATGTTGGCCTTTTTCAGGTCGAGATGGTTGAGATCCCTCGCCATTGAAGTAGACCCAACAGCTCAGTTCCTCAGTCGCCATCGTTCACCGAATCTTCTCCCACCGGTTTTCCCCTACGAAGAACTCGAATCCTCAACCAATCGATTCGACCCAAAGAGGAAACTAGGCGACGGTGGATTTGGGTCTGTTTATTTGGGTCAGCTCAACGATGGTCGATTAGTCGCCGTCAAGTATCTTCACAAGCACCACGCCACCGCCGCCGCGCCCTCCGGCAAGGCTTTCTTCACCAAATCGTTCTGTAACGAAATCTTGATTCTTTCTTCAATTAATCACCCAAATCTCGTTAGGTTACATGGGTATTGTAGTGATCCACGAGGGCTTATTCTAGTCTATGATTATGTCCCAAATGGGACACTCGCCGATCATCTCCATGGCCCTAAATGCTCGTACCGGAAGGGATCTCTGTCCTGGCAAGTGAGGATCGACATCGCTCTGCAAATTGCCATGGCTATGGAGTATTTGCATTTCTCTGTGGTACCGCCGATTGTTCACAGAGACATTACTTCTTCCAACATTTTTGTGGAGAAAGATATGAGAATCAAAGTTGGGGATTTTGGGCTTTCAAGGCTGTTGGTTTTCTCAGATACGACGTCGTCTTCATCTGGGTATGTCTGCACCGGACCTCAGGGGACGCCCGGTTACTTGGATCCGGATTACCACCGGTCCTTCCGGTTGACGGAGAAAAGTGACGTGTACAGCTTTGGAGTGGTGTTATTGGAGCTGATTTCTGGTCTGAAAGCGGTGGATCAGAGTCGAGAGAGAAGAGAAATGGCGCTAGCGGATCTGGTAGTGTCCAAGATCCAAATGGGTCAGCTTCATCAGGTGGTGGACTCTGTTTTGGGCGTTGACGGCGAGGTAATCGACGGCGTTGAGGCCGTGGCGGAGCTGGCATTTCGATGCGTTGCCGCGGACAAAGACGACCGCCCAGACGCCAAGGAAATCGTGGAGGAACTCCGGCGGATTCGGAACGGCACACGTGGAGGGGTCCGGTCGTCGATTTCAAACGGGAGTGCTGACGTGGCTAGAAGTTGA 1890 48.47 MPSPSPSFTVSAIVVFFLHLFPLFRVESLSSSCPPFSSQLRFPFSSVSGHGHPSFQVRCSSPHSVISINGIPFSLLSFNITSTTLLLSPLPLNVTPTLKESNHSCFSLRSSSIPSRSIDFSGSPFRISDGYCSRLSLLRPCSPPHLPNCSHCPWECNLIKKPVNLLHGCGVERQSVSEQGCQEEVLEYLDRILRLGFEVEWDKDQDPYFMKCNDCEAKKGVCGFNASDPDRQFICYYTRTRYSYPNRIAILSSVFALMCLLLVFAVMLAFFRSRWLRSLAIEVDPTAQFLSRHRSPNLLPPVFPYEELESSTNRFDPKRKLGDGGFGSVYLGQLNDGRLVAVKYLHKHHATAAAPSGKAFFTKSFCNEILILSSINHPNLVRLHGYCSDPRGLILVYDYVPNGTLADHLHGPKCSYRKGSLSWQVRIDIALQIAMAMEYLHFSVVPPIVHRDITSSNIFVEKDMRIKVGDFGLSRLLVFSDTTSSSSGYVCTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLKAVDQSRERREMALADLVVSKIQMGQLHQVVDSVLGVDGEVIDGVEAVAELAFRCVAADKDDRPDAKEIVEELRRIRNGTRGGVRSSISNGSADVARS 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34373875 34375764 + ClG42_05g0267600.10 Clacu05g2676 250423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2676 629 Pfam Protein kinase domain 317 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2676 629 ProSitePatterns Tyrosine protein kinases specific active-site signature. 448 460 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2676 629 SUPERFAMILY Protein kinase-like (PK-like) 295 604 IPR011009 -
Clacu05g2676 629 ProSiteProfiles Protein kinase domain profile. 315 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2676 629 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524(InterPro)
Clacu05g2676 629 Gene3D Transferase(Phosphotransferase) domain 1 400 619 - -
Clacu05g2676 629 CDD STKc_IRAK 321 607 - -
Clacu05g2676 629 FunFam Putative serine/threonine-protein kinase At1g18390 family 291 399 - -
Clacu05g2676 629 Pfam Wall-associated receptor kinase C-terminal 177 238 IPR032872 -
Clacu05g2676 629 Gene3D Phosphorylase Kinase; domain 1 290 399 - -
Clacu05g2676 629 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 31 613 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2676 Clacu-Chr5:34373875 Clacu11g1083 Clacu-Chr11:13526810 8.50E-78 dispersed
Clacu05g2676 Clacu-Chr5:34373875 Clacu05g2448 Clacu-Chr5:32642281 2.20E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73604 PF00069 Pkinase 6.40E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2676 - - - 0.0