Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2680 ATGGATCGTCTTCACCTGCAATGGATTGCTGTTATGATCTCCATTATGAGCCTTTCTGAAGCTTGCCATCCTGCGGATTGGAAGGGTCTAACCAGTTTCAAGTCTGGAATTTTCCTTGACACTTCTGGTAGGCTTGCAAAGTGGGTGGGACGAAACTGTTGTGATTGGGAAGGAGTTTCTTGTCACAACATTACAGGCAGAGTCAAAGAAATCAATTTGCCAGGCTTCATATCAACTGGTGATCTCCCCTTTCAGTCTGAGATGAGAGGCTTTCTTTCACCTTCAATAACACTGCTTAATGCCGTTGAGATTATAGATCTTGGAGGACTTCTTGGCCTCGGTGGAACAATCCCTTCGTTTATCGGTTTACGGCTTCGTAGCCTGCGAAAGCTCTATCTTTATGGCAACAAGCTGAGAGGTCCACTTCCAGAAAGTGTAGGTAAGCTTCTGAAGCTTGAAGAACTCGCTGTGCATGATAATAAGCTATCTGGTTCACTCCCGGCATGTCTTGGCAGTCTCAAGACTCTCCATAGCCTTCTTCTATATGGAAATCGGTTTTCGGGTGCAATACCGGATTCATTTGCAGATCTTACTAACTTAGTTCAGATGGATTTACACAGCAACGCATTGGTTGGTCACATACCTGAGAGCATTGGTCAGTTGCAGATGTTGAAAGAGCTTGATCTTTCAAACAACTTCTTGAGCGGGAAAATTCCCCTTTCCTTAAACAATTTGACAAGTCTTTCAGTTTTGTATTTGGATAATAACAATCTGGAGGGACCAATGCCATTCGCATCAGTTTCTGGTCAGATCTCTTCTTCTTCTTCTTCTCTTGCTTTTCTTAGACTGAATGACAACCGTTTAAGTGGTGCTATCCCTTCTAGTTTTGGAGAGCTTGTCTTTCTCAAAAGAGCTTCACTTTCAAATAACAAACTTGAGGGAATAATTCCTCCTTCTTTAGGAAGGTTATCATCTTTGTCAGAGTTGTATCTCGACCGAAACTGCTTCTCCGGCCGAATACCAGATTCATTTGGACACCTCTCTCAGCTCATTCTCCTGAATCTCTCTCACAATTCCATCAAAGGGCCATTACCTGAGATGTCATCTCTTCGAAATATTCAAACCATTGATCTTTCTTACAACCTTCTAGACATGTCTTCAATTCCCCAGTGGCTATTAAGACTACCATCTCTTTCAAAAATCTATCTTGCAGGGTGTGGAATCCATGGCCAAATTCCAGAGTTCTTGCGAACAACTCCAAGTCCAATACAGGAACTAGATCTTTCCCTCAACCATCTTACTGGGAAAATTCCAGAATGGATTGGAAGCCTCACTCAGCTCTATTCACTAAAACTATCAGAAAACTCACTAATCTCTGAGATTCCCAATTCCATTACAAATTTACTGGACTTGCGTGTACTCGATCTTCATTCAAACAAGTTAACAGGCAATATACAGCAGATCTTCAAGATAGGACACAGATTTCCAGACGATTCTTTAACATACATTGATATTTCAGACAATAACTTCTCTGGGGACTTTGATCAAACAGATGTCGGAAAACAACCTGCGATTCAGTTTCTGAATTTGTCGCATAACAATCTGAAAGGAAGATTGCCCACTTCAATCGGAGCATTAAGATCAATACGAAGCCTGGATTTGAGCCGTAACAATTTGGGCTTCGACTTGCCAGAGGCCATAGTGAATGCAAACCAATTAGAGACGCTGAAGCTGCAAAGAAACCATTTTACAGGAAAAATACCAAAAGGGTTTCTGAAGTTGCGGAGGTTAAAGGAATTGGATCTGTCGAATAATTTGTTAGTGGGAGAAATTCCAGCGGGAAAGCCGCTGAGCGATTTTCCTCGAAGCGCTTACATGGGTAACAAAGGTTTGTGTGGAAAGCCTTTAAGCCCATGTAAGCTTTGA 1926 42.0 MDRLHLQWIAVMISIMSLSEACHPADWKGLTSFKSGIFLDTSGRLAKWVGRNCCDWEGVSCHNITGRVKEINLPGFISTGDLPFQSEMRGFLSPSITLLNAVEIIDLGGLLGLGGTIPSFIGLRLRSLRKLYLYGNKLRGPLPESVGKLLKLEELAVHDNKLSGSLPACLGSLKTLHSLLLYGNRFSGAIPDSFADLTNLVQMDLHSNALVGHIPESIGQLQMLKELDLSNNFLSGKIPLSLNNLTSLSVLYLDNNNLEGPMPFASVSGQISSSSSSLAFLRLNDNRLSGAIPSSFGELVFLKRASLSNNKLEGIIPPSLGRLSSLSELYLDRNCFSGRIPDSFGHLSQLILLNLSHNSIKGPLPEMSSLRNIQTIDLSYNLLDMSSIPQWLLRLPSLSKIYLAGCGIHGQIPEFLRTTPSPIQELDLSLNHLTGKIPEWIGSLTQLYSLKLSENSLISEIPNSITNLLDLRVLDLHSNKLTGNIQQIFKIGHRFPDDSLTYIDISDNNFSGDFDQTDVGKQPAIQFLNLSHNNLKGRLPTSIGALRSIRSLDLSRNNLGFDLPEAIVNANQLETLKLQRNHFTGKIPKGFLKLRRLKELDLSNNLLVGEIPAGKPLSDFPRSAYMGNKGLCGKPLSPCKL 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34396504 34398429 + ClG42_05g0268000.10 Clacu05g2680 250427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2680 641 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515(InterPro)
Clacu05g2680 641 Pfam Leucine Rich Repeat 224 245 IPR001611 GO:0005515(InterPro)
Clacu05g2680 641 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515(InterPro)
Clacu05g2680 641 Pfam Leucine Rich Repeat 176 197 IPR001611 GO:0005515(InterPro)
Clacu05g2680 641 FunFam Leucine-rich repeat receptor protein kinase EMS1 270 364 - -
Clacu05g2680 641 Pfam Leucine rich repeat 277 334 IPR001611 GO:0005515(InterPro)
Clacu05g2680 641 Pfam Leucine rich repeat 548 607 IPR001611 GO:0005515(InterPro)
Clacu05g2680 641 Pfam Leucine rich repeat 423 481 IPR001611 GO:0005515(InterPro)
Clacu05g2680 641 Gene3D Ribonuclease Inhibitor 268 366 IPR032675 -
Clacu05g2680 641 PRINTS Leucine-rich repeat signature 594 607 - -
Clacu05g2680 641 PRINTS Leucine-rich repeat signature 224 237 - -
Clacu05g2680 641 SMART LRR_typ_2 594 616 IPR003591 -
Clacu05g2680 641 SMART LRR_typ_2 323 346 IPR003591 -
Clacu05g2680 641 SMART LRR_typ_2 370 395 IPR003591 -
Clacu05g2680 641 SMART LRR_typ_2 444 468 IPR003591 -
Clacu05g2680 641 SMART LRR_typ_2 125 148 IPR003591 -
Clacu05g2680 641 SMART LRR_typ_2 149 173 IPR003591 -
Clacu05g2680 641 SMART LRR_typ_2 546 570 IPR003591 -
Clacu05g2680 641 SMART LRR_typ_2 245 274 IPR003591 -
Clacu05g2680 641 SMART LRR_typ_2 197 221 IPR003591 -
Clacu05g2680 641 SUPERFAMILY L domain-like 273 487 - -
Clacu05g2680 641 SUPERFAMILY L domain-like 22 264 - -
Clacu05g2680 641 Gene3D Ribonuclease Inhibitor 196 267 IPR032675 -
Clacu05g2680 641 Gene3D Ribonuclease Inhibitor 25 193 IPR032675 -
Clacu05g2680 641 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Clacu05g2680 641 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 81 269 - -
Clacu05g2680 641 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 274 633 IPR052592 -
Clacu05g2680 641 Gene3D Ribonuclease Inhibitor 367 641 IPR032675 -
Clacu05g2680 641 SUPERFAMILY L domain-like 423 635 - -
Clacu05g2680 641 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 365 641 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2680 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2680 Clacu-Chr5:34396504 Clacu10g1702 Clacu-Chr10:30522574 5.90E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g818 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02493 Cam05g2678 Cec05g2712 Cco05g2747 Clacu05g2680 Cmu05g2535 Cre05g2650 . . . . Lsi04g00493 Csa05g02392 Chy10g00954 Cme10g00472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014248 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 23