Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2684 ATGAGTGGATGGGATAGGGTTAGACCATCGAGTTCGAGATTTGGGCGGGGTAATTCTGCAATGCACCAGAGGACCACCTCTACTACAACGGTTCGACTCGGACGAGTCCAGCCGCAGGCCCCTGGACATCGCACCATCTTCTGCAATGATCGCGACGCTAATCTTCTTGTCAAATTCAAGGGGAATTCAGTTTCGACGACTAAGTACAACTTCTTCACTTTCTTTCCGAAAGGGTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACCATCTCAATCTTATCCACCACACCCATCAGTCCTGTGCATCCAATTACAAATGTGGTCCCTTTAAGTCTGGTTCTACTCGTCTCTCTCATTAAAGAAGCATTTGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTGCTGCAAGATCAAAAGTGGGAGAGCGTTCCTTGGAAAAGGTTGCAAGTTGGAGACATTGTTAGGGTTCGGCAAGATGGATTTTTTCCTGCGGATCTTCTTTTCCTTGCTAGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACCTGGACGGGGAGACAAATTTGAAGATTAGGAAGGCCTTGGAAAAGACCTGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACAGGCAATGTTATTATTCAGAAGCAAACATTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGATGCAGTCTCAGGAACACTGAGTATATTGTTGGGGCTGTTATTTTTACAGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACTCTGGAAAAGAAACTTGACAAACTTATACTTACACTATTTGCTACTCTCTTTATGATGTGTTTGATTGGAGCCATCGGCAGTGGTGTGTTTGTAAACCAAAAGTACTACTACTTAGCTCTTGATAAGGGAGGTGAAAACCAATTCAACCCTCGCAACCGGTTCCTGGTTGTCATTCTGACCATGTTTACCCTGATTACTCTGTACTCGACAATCATTCCTATTTCCCTTTATGTTTCCATTGAGATGATCAAATTTATTCAATCGACACAATATATCAATAAAGATCTAAATATGTTCCATGCTGATAGCAATACCCCTGCATTGGCCAGAACTTCCAATTTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCAATTGGTGGAGAGGTTTATGGCACTGGTATCACAGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGCACACAGATCAGCCAATGCTGTTCAAGAAAAGGGATTTAACTTCGATGATGCAAGGCTAATGAGAGGAGCATGGAGAAATGAGCCCAACGCTGATCTTTGTAAGGAATTTTTCAGATGCCTTGCTATTTGTCATACTGTACTTCCTGAGGGTGACGAATCCCCAGAAAAGATCACATATCAAGCAGCATCACCTGATGAGGCTGCCTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACACCTACAACAATATATGTTCGCGAATCTCATGTTGAGAAGATGGGTAAAATCCAAGATGTTTCTTATGAAATTCTGAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTGGTCTGTCGTTATTCTGATGGCAGGCTTGTTCTGTACTGCAAGGGTGCTGATACCGTAGTATATGAGAGATTGGCTGGTGGAAATGATGATCTGAAGAATGTAACTAGGGAACACTTGGAGAAATTTGGATCTTCCGGTCTGAGAACCCTATGCCTTGCTTACAGAGATTTGCATCCTGACGTGTATGAAAGCTGGAATGAGAAATTCATTCAAGCTAAGTCTTCATTAAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAAAGAACTTATTTTGATTGGCTGTACTGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACACTTTCTAGAGCTGGTATCAAGATTTGGGTGCTAACAGGAGACAAGATGGAAACTGCTATTAATATAGCTTATGCTTGCAATTTAATAAACAATGAAATGAAACAATTTATTATCAGTTCAGAAACGGATGCAATCAGAGAAGTTGAAAACAGGGGTGACCAAGTAGAACTTGCACGTTTTATTAGAGAAGAAGTAAAAAAGGAACTGAAGAGATGTCTTGAGGAAGCGCAGCAGTGTTTACATTCTGTCTCTCCACCAAAATTAGCACTCGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAACTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCGCAGGTGACAAGTCTGGTGAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGTGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAAGGAATGCAAGCAGTGATGGCTAGTGATTTTGCTATTGCTCAGTTTCGCTTTCTCACAGATTTGCTTCTTGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTTGTCACGTACTTCTTTTACAAGAATCTTACATTCACTTTAACTCAGTTTTGGTTTACCTTCCAAACTGGATTTTCTGGTCAAAGATTCTACGATGATTGGTTCCAGTCGTTGTATAATGTCATATTCACCGCCCTACCTGTAATAATAGTTGGACTATTTGACAAGGATGTCAGTGCTTCCCTTTCCAAAAAGTACCCTGAGCTCTACAGAGAGGGAATAAAAAATGTGTTCTTCAAGTGGAGAGTTGTGACAACTTGGGCTTTCTTTTCCATCTACCAATCTTTAGTCTTTTATTATTTTGTAACCGCTTCTAGTTCCAGCAGTCAATCGTCATCTGGCAAGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACTTGCATTGTCGTGACTGTGAATTTGCGGCTGCTTATGATCTGCAATTCAATTACCCGGTGGCATTATATTACGGTTGGGGGAAGCATTTTAGCATGGTTCCTATTTATTTTCTTATATTCCGGTATTATGACACCCCATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCTTAATGAGTACATTATACTTTTACGTAGCTGTTATCCTTGTCCCCGTTGTTGCACTTCTTTGTGATTTCGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTACGATTATCAGATAGTACAAGAAATACATAGACATGAACCTGAAGGTAGAGGTACGGCAGGATTGCTGGAGATTCAGAACCATCTTACACCGGAAGAGGCAAGAAGCTACGCCATGGCTCAACTCCCTCGAGAATTATCAAAGCACACTGGCTTTGCTTTTGACTCACCTGGCTACGAGTCATTTTTTGCTGCACAGCTTGGTATTTATGCCCCACAGAAAGCATGGGATGTTGCTAGGAGAGCCAGTGTGAAGTCAAGACCAAAGATTAAGGAAAAGAAGTATTTTCCCAACACAACATCCTTCAAGAGAAAGCTCAACAGAAGTCAAATCTCCTATGCTTTACTGAATGCAAGCTGTTTTAGATTCTCTTGGAGGCTAATTGATTCAGCAAGATGCTTTCTAGCCAGTAGCGTCAAGTTTCACTGTGTAATTATGGATTTGAGGAAGAAGTTGGGAAGACAGCAAAGGGAATGGATCAGAAACATTGTGCTATATGCTTTGTCTTTTATTGAGGTGGTCTTGCTTGGAGCTCTGGTTGTGGGGCTGTTTGTATGGCTTTTAATCGTTGGGTCGCCACCGCCGGGAAGAACGACAAGCTGGCCGGAAGCCAAGTCTGAGGTTGAGGGAAGCCGTGTCATGAAGCAAGCTAAGGAATTGACCAACATCAACCATCCAAAGTTGGATCCTAACTTTATGAGCAAAGTTAGAGTTCCTAAAGGACCGGACCCCATTCATAACAGGAGAATTGGGGTTAAAGGAGGGACTCCCAGAGGAGCTTAG 4179 41.68 MSGWDRVRPSSSRFGRGNSAMHQRTTSTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESVPWKRLQVGDIVRVRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFATLFMMCLIGAIGSGVFVNQKYYYLALDKGGENQFNPRNRFLVVILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGTGITEIERGIAEQNGLKVEEAHRSANAVQEKGFNFDDARLMRGAWRNEPNADLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKIQDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVVYERLAGGNDDLKNVTREHLEKFGSSGLRTLCLAYRDLHPDVYESWNEKFIQAKSSLRDREKKLDEVAELIEKELILIGCTAIEDKLQEGVPNCIQTLSRAGIKIWVLTGDKMETAINIAYACNLINNEMKQFIISSETDAIREVENRGDQVELARFIREEVKKELKRCLEEAQQCLHSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYREGIKNVFFKWRVVTTWAFFSIYQSLVFYYFVTASSSSSQSSSGKVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFLFIFLYSGIMTPHDRQENVYFVIYVLMSTLYFYVAVILVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRGTAGLLEIQNHLTPEEARSYAMAQLPRELSKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRPKIKEKKYFPNTTSFKRKLNRSQISYALLNASCFRFSWRLIDSARCFLASSVKFHCVIMDLRKKLGRQQREWIRNIVLYALSFIEVVLLGALVVGLFVWLLIVGSPPPGRTTSWPEAKSEVEGSRVMKQAKELTNINHPKLDPNFMSKVRVPKGPDPIHNRRIGVKGGTPRGA 1392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34421051 34442879 + ClG42_05g0268400.10 Clacu05g2684 250431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2684 1392 Gene3D - 687 894 IPR023214 -
Clacu05g2684 1392 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Clacu05g2684 1392 SFLD p-type atpase 404 905 IPR044492 -
Clacu05g2684 1392 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 1145 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER)
Clacu05g2684 1392 Gene3D - 534 686 IPR023299 GO:0000166(InterPro)
Clacu05g2684 1392 MobiDBLite consensus disorder prediction 12 29 - -
Clacu05g2684 1392 MobiDBLite consensus disorder prediction 1 29 - -
Clacu05g2684 1392 NCBIfam HAD-IC family P-type ATPase 827 933 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu05g2684 1392 NCBIfam phospholipid-translocating P-type ATPase 59 1140 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Clacu05g2684 1392 SFLD Haloacid Dehalogenase 404 905 - -
Clacu05g2684 1392 Pfam E1-E2 ATPase 143 322 - -
Clacu05g2684 1392 Pfam Phospholipid-translocating P-type ATPase C-terminal 882 1132 IPR032630 -
Clacu05g2684 1392 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Clacu05g2684 1392 PRINTS P-type cation-transporting ATPase superfamily signature 854 873 - -
Clacu05g2684 1392 Pfam Phospholipid-translocating ATPase N-terminal 46 110 IPR032631 -
Clacu05g2684 1392 Pfam Cation transport ATPase (P-type) 518 614 - -
Clacu05g2684 1392 FunFam Phospholipid-transporting ATPase 687 894 - -
Clacu05g2684 1392 FunFam Phospholipid-transporting ATPase 531 686 - -
Clacu05g2684 1392 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1132 IPR023298 -
Clacu05g2684 1392 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Clacu05g2684 1392 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 487 692 IPR023299 GO:0000166(InterPro)
Clacu05g2684 1392 CDD P-type_ATPase_APLT_Dnf-like 61 1014 - -
Clacu05g2684 1392 MobiDBLite consensus disorder prediction 1356 1392 - -
Clacu05g2684 1392 FunFam Phospholipid-transporting ATPase 120 289 - -
Clacu05g2684 1392 SUPERFAMILY HAD-like 410 897 IPR036412 -
Clacu05g2684 1392 Gene3D - 124 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2515 Clacu-Chr5:33258268 Clacu05g2684 Clacu-Chr5:34421051 2.10E-278 dispersed
Clacu05g2684 Clacu-Chr5:34421051 Clacu06g0874 Clacu-Chr6:11039642 3.70E-275 dispersed
Clacu04g0688 Clacu-Chr4:20833905 Clacu05g2684 Clacu-Chr5:34421051 1.30E-194 transposed
Clacu08g0999 Clacu-Chr8:20034903 Clacu05g2684 Clacu-Chr5:34421051 5.20E-185 transposed
Clacu05g2684 Clacu-Chr5:34421051 Clacu08g1065 Clacu-Chr8:20666516 8.30E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2684 K14802 - csv:101207069 2368.96