Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2695 ATGGCCAGAAACTCCATCTTCTCCCTCCGCCGGAGGTCGGATCCGTTCGACGGTTTAGATCGTTTCACCACCTCTGATTCCGAGGTTCATGTTCTCGCCGTCGATGACAACCTCGTCGACCGTACAGTAATTGAACGTCTCCTCCGCCTCACTGCCTGTCGAGTTACTGCAGTAGATAGTGGAATTAGAGCTTTACAATATCTCGGATTGCAAGAGGAGACTAGTTCCCAAGTTGGTTTTGATAGCTTGAAGGTCGATATGATCATAACCGACTACTGTATGCCCGGAATGACAGGATATGAATTGCTAAAGAAAATTAAGGAGTCATCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAGAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTAGCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGACGAAAAGACTGGAAGTGAAAGAAGTGGGATCAACAAAAGGAAGCTACGAGAGCCGTGTGATCAACCTTCGTCATCGCCGTCCATTTCATCCCCAGCATCATCGGATTCCTCTCCATCATGTCCATCATCTTCATCACCGTCAGATTCGCTTCAATCAACCCCATCATCGTCAGAGCCGTCTTCTCCGACGTCTACTCCTCAATCCGACGGCTCTAAATGA 699 48.78 MARNSIFSLRRRSDPFDGLDRFTTSDSEVHVLAVDDNLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQEETSSQVGFDSLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLADVKRLREYMVGDEKTGSERSGINKRKLREPCDQPSSSPSISSPASSDSSPSCPSSSSPSDSLQSTPSSSEPSSPTSTPQSDGSK 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34526605 34527587 - ClG42_05g0269500.10 Clacu05g2695 250442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2695 232 MobiDBLite consensus disorder prediction 180 232 - -
Clacu05g2695 232 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160(InterPro)
Clacu05g2695 232 Gene3D - 29 187 - -
Clacu05g2695 232 SUPERFAMILY CheY-like 29 154 IPR011006 -
Clacu05g2695 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 218 IPR045279 GO:0009736(InterPro)
Clacu05g2695 232 MobiDBLite consensus disorder prediction 161 232 - -
Clacu05g2695 232 CDD REC_typeA_ARR 31 153 - -
Clacu05g2695 232 MobiDBLite consensus disorder prediction 161 179 - -
Clacu05g2695 232 SMART REC_2 29 154 IPR001789 GO:0000160(InterPro)
Clacu05g2695 232 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2695 Clacu-Chr5:34526605 Clacu05g2882 Clacu-Chr5:35979440 4.10E-38 dispersed
Clacu01g0751 Clacu-Chr1:8107677 Clacu05g2695 Clacu-Chr5:34526605 3.30E-39 transposed
Clacu10g1595 Clacu-Chr10:29270778 Clacu05g2695 Clacu-Chr5:34526605 1.90E-40 transposed
Clacu05g2695 Clacu-Chr5:34526605 Clacu06g1772 Clacu-Chr6:28263442 2.60E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47798 PF00072 Response_reg 1.20E-21 CL0304 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2695 K14492 - csv:101209506 338.576