Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2703 ATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTACTCTGTCAAGAAGATTCTTCCGGCGTCTTCTCCGGCGAGACGCCGGGGTGTTCTTCCGACCTTGATTCTCCGGCTTGCGTCGAGGAATCTATTTCCGTCTTCATCAAGAATGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTCGCGCTACCAATCTCCGTCGCTTGATGCGGCCGCTAGATTAGACTCTATTGCATGGATTCTTAAGGTTCAAGCGTATTACGGTTTTCAGCCGTTGACAGCGTATCTCTCCGTCAACTACTTGGATCGCTTCCTTAGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGTCTCTCACTCGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCATTACTGGATCTTCAGGTTGAAGGGGCTAAATATATATTTGAACCCAGAACGATATGCAGGATGGAATTATTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAGTAACACCCTTCAATTTCATAGCATTCTTTGCTTGCAAGCTCGACCCATCTGGAGATTTCATTGGATTTCTTATCTCAAGAGCAACAGAAATTATACTGTCGCATATCCGAGAGGTAATATTTCTGGAGTACTGGCCATCGTGTATTGCGGCGGCCGCGTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGGAAGAGATTGTGCTTGATAATAGCCGGAGAAACTCCCCCAAAATCATACCTCAGTTTAGAGTGACAGTTCGCACTAGAATGAGATCCAGCGACTTATCTTCCACCTACTCTTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGACCCATCTCTGGGTAGATGATGAGAAAGATTCCCAATGGGAGGGGAAACTAAAGGGAAAGAGGGGTTTGTTTGATTTTGAGGGAAATGGCAGAGCGTTGAATAAGTGGAGTCCATATGGAGTGTGA 1083 46.26 MSVSISNCFSNLLCQEDSSGVFSGETPGCSSDLDSPACVEESISVFIKNERHFVPDYDCLSRYQSPSLDAAARLDSIAWILKVQAYYGFQPLTAYLSVNYLDRFLSSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIILSHIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMEEIVLDNSRRNSPKIIPQFRVTVRTRMRSSDLSSTYSSSSSSSSSPNKRRKLNQTHLWVDDEKDSQWEGKLKGKRGLFDFEGNGRALNKWSPYGV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34600131 34602968 + ClG42_05g0270300.10 Clacu05g2703 250450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2703 360 Gene3D - 56 173 - -
Clacu05g2703 360 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Clacu05g2703 360 MobiDBLite consensus disorder prediction 295 320 - -
Clacu05g2703 360 SUPERFAMILY Cyclin-like 34 172 IPR036915 -
Clacu05g2703 360 SUPERFAMILY Cyclin-like 157 275 IPR036915 -
Clacu05g2703 360 PANTHER CYCLINS 36 268 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu05g2703 360 Gene3D - 46 236 - -
Clacu05g2703 360 Pfam Cyclin, N-terminal domain 43 173 IPR006671 -
Clacu05g2703 360 SMART Cyclin_C_2 175 311 IPR004367 -
Clacu05g2703 360 ProSitePatterns Cyclins signature. 73 104 IPR048258 -
Clacu05g2703 360 MobiDBLite consensus disorder prediction 295 317 - -
Clacu05g2703 360 Pfam Cyclin, C-terminal domain 175 285 IPR004367 -
Clacu05g2703 360 SMART cyclin_7 78 166 IPR013763 -
Clacu05g2703 360 CDD CYCLIN_AtCycD-like_rpt2 175 265 - -
Clacu05g2703 360 FunFam D2/4-type cyclin 56 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0851 Clacu-Chr4:22852176 Clacu05g2703 Clacu-Chr5:34600131 2.10E-23 dispersed
Clacu05g2254 Clacu-Chr5:30960746 Clacu05g2703 Clacu-Chr5:34600131 1.10E-37 dispersed
Clacu05g2703 Clacu-Chr5:34600131 Clacu09g2091 Clacu-Chr9:35717818 3.10E-125 dispersed
Clacu05g2703 Clacu-Chr5:34600131 Clacu08g1308 Clacu-Chr8:23029273 1.10E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2703 K18810 - csv:101209417 590.112