Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2718 ATGGCATCAAGATCCCCCACAAACTTTTTGGACCTGGCTTCTGGAGATTTACTGGATGTCCCTCGTACACCCAGGTCCCTGCCACGGGTAATGACTGTTCCTGGAATTATTTCTGAATTGGATGATTATGGAAGTAATGATGGAGATTCGGAGTCTTCATCTGTGTACCGTGAGAGGAAAATCATAGTTGCGAATATGTTGCCCTTGCACGCTAAAAAAGATGGGGAATCTGGCAAATGGTGCTTCAGTTTAGATGAGGATTCAATTTTATTGCAGCTAAAGAATGGGTTTTCGCCTGAGATGGAGGTTATATACATTGGTTCCCTCAAGGTTGAAATCGACGCCAGCGAACAGGAAGAGGTTGCTCAGAAGCTGTTCGACAATTTTAATTTTGTACCTACATTTCTTCCTTCTGATCTCCAAAAAAACTTTTATCTTGGGTTTTGCAAACAGCAGCTTTGGCCCTTATTCCATTACATGCTACCCATGTGCCCAGAGCACGGTGATCGCTTCGATCGGCAGCTTTGGCAAGCCTATGTTTCTGCGAATAAAATGTTTGCCGACAAGGTGATGGAAATCATCAATCCTGAGGAAGATTCTATTTGGGTTCATGATTATCATTTAATGGTTCTTCCAACGTTCCTGAGGAAGCGCTACAATCGAGTTAAACTTGGATTTTTTCTGCATAGCCCGTTTCCATCATCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGCCTGTTAAACTGTGATTTACTTGGTTTTCATACGTTTGATTATGCACGTCACTTCCTCTCATGCTGCAGCAGAATGTTGGGCTTGGACTATGAATCTAAGCGGGGACATATTGGACTGGATTATTATGGTCGCACGGTATATATCAAAATTCTGCCTGTAGGAATTCACATGGGTCGGCTGGAATCAGTGATGAATCTTCCATCTACATTTGCTAAAGTCAAAGAAATTCGAGATCAGTTCATGGGGAAGAAACTAATACTTGGTATTGATGACATGGACATTTTTAAGGGTATAAGCCTGAAGCTTCTCGCTGTGGAACAGCTTTTACGGCAACATCATGAGTTGCGGGGCAAAATAGTCCTGGTTCAAATAGTGAACCCTGCAAGGGGTTCAGGAAAAGATGTACATGAAGCTCAGAAGGAAACCTATTTGGCTGCTGAAAGGATCAATCAAGCTTACGGTTCAAATAACTACAAACCAGTAATTCTGATTGATCGCCCAGTTCCACGTTTTGAGAAGACTGCTTATTATGCTTTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGATGGCATGAATTTGGTTCCATACAAGTATATTGTCTGCAGGCAAGGAACTCCTCTTATGGATGAGGCTATGGGCTTACAAATTGGTTCTCCTCGGACGAGTATGCTTGTAGTGTCTGAGTTTATTGGTTGCTCGCCCTCTTTAAGTGGAGCAATCAGGGTTAACCCTTGGGACATTGATGCTGTTGCCGATGCCTTGGAACTAGCCATAACAATACCGGAGTCAGAGAAGCAGCTGCGGCATGAAAAACATTATCGATATGTCAGTTCCCACGATATAGGATATTGGTCTCGTAGTTTTATGCAAGATTTAGACAGAGCATGTCAAGATCACTATAGTAAACGGTGCTGGGGGATTGGCTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACTATTGATCACATTGTCTCAGCTTATAAAAGAACTCATAGAAGAGCGATATTTTTGGATTACGATGGCACTATCATTTCACAAAGCTCTATAATTAAGACACCAAGCCCTGAAGTTATCTCTGTCTTGACTACGCTTTGCAATGACCCCTGTAACACTGTGTTCATTGTTAGTGGGAGGGGGAGAAGTTCTTTAGGTCAGTGGTTTGCGTCTTGTGAGATGTTGGGGATTGCAGCAGAACATGGGTACTTCATAAGGTGGGGTGGAACTTCAGAATGGGAAACCAGTCCATTGTCTTCTGATCTGGATTGGATTAAAATTGTGGAGCCAGTGATGAGATTATATACCGAAGCAACAGATGGCTCGTGCATAGAACCCAAAGAGAGTGCTTTAGTCTGGCATCATCAAGATGCTGATTCTGACTTCGGATCCTGTCAAGCCAAGGAATTGCTGGACCATCTAGAAAATGTACTTGCCAACGAACCGGCCGTTGTTAAAAGGGGCCAACATATTGTTGAAGTGAAGCCACAGGGAGTAAGCAAAGGGTTGGTCGCAGAAAAGGTTCTCTCGAGAATGGTAGATAGTGGAAGACCACCTGATTTCGTTATGTGCATTGGAGATGATCGATCAGATGAAGATATGTTTGAGAGCATATTAAGCACTGTCTCCAGTCCCTCACTGCCTTCCGCTCCAGAAATTTTTGCCTGTACTGTTGGGCGAAAGCCAAGCAAGGCCAAGTTTTACCTTGATGATACTTCCGACGTCGTGAAATTGCTGCAATGCCTTGCCTCTTCGTCACGTCCAAGACCTCGGCAACTACCACAGATGCGTGTTTCTTTTGAGAGTGTTTTTTGA 2583 43.52 MASRSPTNFLDLASGDLLDVPRTPRSLPRVMTVPGIISELDDYGSNDGDSESSSVYRERKIIVANMLPLHAKKDGESGKWCFSLDEDSILLQLKNGFSPEMEVIYIGSLKVEIDASEQEEVAQKLFDNFNFVPTFLPSDLQKNFYLGFCKQQLWPLFHYMLPMCPEHGDRFDRQLWQAYVSANKMFADKVMEIINPEEDSIWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLLGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTFAKVKEIRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQHHELRGKIVLVQIVNPARGSGKDVHEAQKETYLAAERINQAYGSNNYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPLMDEAMGLQIGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAITIPESEKQLRHEKHYRYVSSHDIGYWSRSFMQDLDRACQDHYSKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTHRRAIFLDYDGTIISQSSIIKTPSPEVISVLTTLCNDPCNTVFIVSGRGRSSLGQWFASCEMLGIAAEHGYFIRWGGTSEWETSPLSSDLDWIKIVEPVMRLYTEATDGSCIEPKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQCLASSSRPRPRQLPQMRVSFESVF 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34703515 34706260 - ClG42_05g0271800.10 Clacu05g2718 250465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2718 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 851 - -
Clacu05g2718 860 Pfam Trehalose-phosphatase 594 829 IPR003337 GO:0005992(InterPro)
Clacu05g2718 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
Clacu05g2718 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Clacu05g2718 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Clacu05g2718 860 Gene3D - 720 848 IPR023214 -
Clacu05g2718 860 Gene3D - 590 709 IPR023214 -
Clacu05g2718 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Clacu05g2718 860 Gene3D Glycogen Phosphorylase B; 52 311 - -
Clacu05g2718 860 SUPERFAMILY HAD-like 591 839 IPR036412 -
Clacu05g2718 860 CDD HAD_TPP 592 833 - -
Clacu05g2718 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Clacu05g2718 860 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
Clacu05g2718 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Clacu05g2718 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
Clacu05g2718 860 NCBIfam trehalose-phosphatase 589 839 IPR003337 GO:0005992(InterPro)
Clacu05g2718 860 CDD GT20_TPS 59 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2718 Clacu-Chr5:34703515 Clacu10g0143 Clacu-Chr10:1744888 0.00E+00 dispersed
Clacu05g2718 Clacu-Chr5:34703515 Clacu06g1795 Clacu-Chr6:28428550 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2718 K16055 - csv:101212688 1705.26