Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2720 ATGGCTGCCTTCATCGACAACAAGAAAACCAAACTCACTCATCACTTGACTGATACCTTCTGCAGACTTTCCGAGCATCGGAGCTCTGCGACTACGGGCAGCGCCGTTTTCCTACCTTTTCACCGGCTGATCTCTTCGCGGTTCTTTGGCTCCTTCGCTACAATGACTCGAGTTTATATTGGTAATCTGGATCCACGCGTTACAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATCGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAAGCATTGGATGGGAAAAATGGTTGGCGCGTGGAGCTTTCTCACAACTCTAAAGGTGGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAGCCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGGGTAGGAGGTGGTTTACGTCGTAGTCCTTCTCCTCGGCGTCGTCGGAGTCCAAGCTATGAAAGATATGGCCGCAGGAGTAACAGTCCTCGTGGTAAAAGATCCCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGGAGCTACAGCAGATCTCCTCCATACCGCCATGCCCGTCGTGCTTCACCTTATGCTAATGGTTCTAATAGGAATTGTGGAGTGAACCGGAACCATGTAGTTAAGTTCATCTGA 753 50.2 MAAFIDNKKTKLTHHLTDTFCRLSEHRSSATTGSAVFLPFHRLISSRFFGSFATMTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRASPYANGSNRNCGVNRNHVVKFI 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34739050 34742704 + ClG42_05g0272000.10 Clacu05g2720 250467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2720 250 Gene3D - 143 209 - -
Clacu05g2720 250 Pfam Zinc knuckle 145 160 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu05g2720 250 MobiDBLite consensus disorder prediction 180 194 - -
Clacu05g2720 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 127 IPR000504 GO:0003723(InterPro)
Clacu05g2720 250 SMART c2hcfinal6 145 161 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu05g2720 250 SUPERFAMILY RNA-binding domain, RBD 54 140 IPR035979 GO:0003676(InterPro)
Clacu05g2720 250 FunFam Serine/arginine-rich splicing factor 7 56 123 - -
Clacu05g2720 250 Gene3D - 26 142 IPR012677 -
Clacu05g2720 250 SUPERFAMILY Retrovirus zinc finger-like domains 138 162 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu05g2720 250 MobiDBLite consensus disorder prediction 120 140 - -
Clacu05g2720 250 MobiDBLite consensus disorder prediction 158 243 - -
Clacu05g2720 250 ProSiteProfiles Zinc finger CCHC-type profile. 145 161 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu05g2720 250 PANTHER RNA RECOGNITION MOTIF-CONTAINING 58 116 - -
Clacu05g2720 250 MobiDBLite consensus disorder prediction 195 221 - -
Clacu05g2720 250 CDD RRM_SRSF3_like 57 125 - -
Clacu05g2720 250 SMART rrm1_1 57 123 IPR000504 GO:0003723(InterPro)
Clacu05g2720 250 Pfam RNA recognition motif 58 115 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2720 K12896 - - csv:101213165 252.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2720 Clacu-Chr5:34739050 Clacu05g2847 Clacu-Chr5:35700208 2.10E-51 dispersed
Clacu05g2720 Clacu-Chr5:34739050 Clacu01g0418 Clacu-Chr1:4224625 1.50E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g741 . . . . . Bpe10g00832 . Bma15g00192 . Cmo18g00811 . Cma18g00809 . Car18g00740 . Cpe09g00496 Cpe01g01520 . . . . . . . Cla05g02528 Cam05g2718 Cec05g2749 Cco05g2790 Clacu05g2720 Cmu05g2574 Cre05g2688 Cone13ag1031 Cone19ag1022 . . Lsi04g00534 Csa05g02349 Chy10g00916 Cme10g00510 Blo06g00870 . . . . . . . . . . Cma04g01717 . Car04g01749 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001098 3 1 1 2 2 1 5 2 2 2 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 2 7 5 2 76