Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2727 ATGACTATATCATTCTCAGAAAAGGTAAAGAAAGAGTGGCTTTTGGGCCGAGGCCCAAAAGCGTCCAAGGACAACGAACTTTCGCCTTGGTTATTACTGGACTCAAACCTACTAAAGAACCCATGGGTTCTGAAATCGCTTCTCCGGCTCTTCCCTTATTCTCTAGTCTCTAGGGCACAACGTACTCCAATTACTTCGTCGGAAAATCTGAAAGATAAGCCTGGAAGCTTTCAACTTCCTTGCGATCTTCTTTCGACTTCAATGGCGGATTCTTCCTCTTCCCCTGCGACTCTCGATTCAAATCCTCAAGCTGCCGAGCCGGAAAACCCCAATTCACAGGCCAACAAACCCGAATCTGCCGCTTCTTCTTTTCCTCCACCGCAATCGCTACCACCAACATCTCTTTCTGTCGGAATAAACCCTACCTTGCATCCACCCTTAGTGTCAACGCCGCAACCACCTCCTTCTCTATCGTATGCCCCCTCACCCTTATCCGGTGCGGTGGCCGTTCCTCCGACGGCACCGTCTTTCCGGCCTGTGCCTCTCTCAGCTCATCACTTCTCGCCCATGCCCGGCACTGGCATGCTGAACCCAAGCTATCCAAACCCTGGGGTTCAGCCTCCGGGGGTTAGCTCGGTTGCGGCGCCTGCTCCCGGTATGGCAAGTGGCGGCACGGGAGCAGTTCCACTTCCAGTGCCACAACCGATGATGGCTTATCAAGTTCCACCGGGTCAGGTTCCGAATCCGGCGATGAGGCCGTACGCCACCATGCCAAATGGTTTCGCAGCTGTGCCAACTGCTACTCCTCAAGGGGCATTTCCTCTCGCTGCGTTTTGTCTCTTGATTGAATACGGTGAGAAAGGTTGGAAGGCTTCATATTGCTTAGAGAACTCCCAACTACAACTCCTTTTTTGGATTTTACTGGTAGTTATATTGGATACTGTCCCTGGATATTTGAATTGCCAGAAGCAGACCATGTTAGCACCTGAGTGTTCGTTCGCCTTGTTTCTAAGGTTATCTATGCATTCAGCTGCTGATAATTTCCATTCCTATGCTGCCATCGTTTATATGCTTTGGATTTTGATATTTTTCTTTATTTGTGCAGGAATTCCACGTTTCCCTTCTCCATATCCTGCTATGATTAGGACGCCTTTTCCTCCACGGCCACCTGGTGCTATGGGCATGGTTCCAGCAATGCCACGACCTCCTATTCCTGGGATTCCTGGTGTGCGCCCAATCATCCCTCCTGTGGTTAGGCCTGCTGTGCTCCCAAGTGTTACACCAGCCGAACAACCACAAACTACTATTTATATTGGCCGAATTGCACAATCAGTGGATAATGATTTCATGCTGTCCCTTCTTCAGCTATGTGGACCAGTGAAGAGCTGGAAACGGGCCCAAAATCCATCGGATGGAACTCCTAGAACCTTTGGATTCTGTGAGTTTGAGTCTGCTGAAGGTGTTCTTCGGGCACTACGGTTACTGACAAAGTTAAACATTGATGGACAAGAACTAGTGCTAAAAGGTACTCAAGCAACAAGAGATTATCTGAAGCGTTATGTTGAAAAGAAAGCAGAGAATTCAAAGAAACTGAAAGAAACACAAGTTTCAGAGACTAAGGAAGAAGAAGCAGCCACAACAAATGTGGCTAGAAATGAAACTTCAAAGCCCTCTGCAGAGGATTCAAAGGAAGATAACGATTCAGGGGAAAAGGATCTTGACATTGCCCGTTCTGCAGTTTTAAGTGATGAAGATAGAGATGCAGACCGTGTGGCGTCGGAAAAACTTACAAATGCACTGGAGGAGAGGTTGAAGTCTAGACCTCTGCCACCACCTCCTCTTATGACAACTGCTGATGTCTCTGGTAATTCAAGTGCGGAGCCATTTGCTAAATTGAAAGATGGTGAAGCTGACACTGATGTTTTGAAACCTGATGCAGCTGATGATAGAAATGATGATGACACAACTAGTGACCATAAACAAACTAGTGAGCAAGACAAGCCTGAAACAAGCTCACCGGACAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAAAGAGATAGGGAGAGGGATCTGAAAAGGGATAAGGAGCGGGAAATTGAGAGATATGAAAGAGAGACAGAGCGGGAGCGAGCTAGGAAGGAGAGGGAACAAAGAAGAAAGTTTGAGGAGGCCGAGCGACAGTATGAAGAATGTCTCAAAGAGTGGGAATATCGAGAAAGAGAGAGAGAAAAGCAGAGGCAGTATGAGAAGGAGAGGGAGAAAGAGAAAGAGCGTAAAAGAAAGAAAGAGATATTGTATGATGAAGATGACGAGGATGACGATTCAAGAAGAAAATGGCGCAGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGGTCTCGAGAAAAGGAAGATGATTCGGTCGATAGACAGAAAGAGGAAGAAGAAATTGCTGAGGCCAAGAGGAAGGCTGAGGAGGAACAGCTGCAGAAACAGAAAGACCCGCTGAAACTTGTATCTGGTCAGATGTCGAATGTCAACGAGAAAACTATTCTTGCTGAAGAATCTGCTAATGAGATTAAAGTTATGGCTTCTGAACGTGAATCTGAGCTTGACTCTAGCTGTGATAACCATATAGGGGATGGGATCTTGCAAAATGGTAGTGGTGATGAACTAAGTACGATACCATCAGAGACTCGACATAGTGGAGGGCTGCCTGCAAAAAGGTTAGGATTTGGTTTAGTGGGATCTGGAAAACGGACTGCTGTACCTTCAGTTTTCCATGAGGAGGAGGATGATGAAGCACAGAAAGAGAAAAAGATGAGGCCGCTGGTTCCAATTGATTACTCAGCTGAGGAACTACAGGCTGTTCAACCTGCCAGTACTGGGGCTTTGCCGCCAAATTTAGCTGCAGCAGCTGAGTTTGCAAAACGTATATCTAATGTTAATTCCAAAGAAGAGAAGTCTGATGGTGAAAGGGAGCGAGGAAGGCGTTCCGGTGAAAAGTCAGGTCATAGAGACCGAAATGATGAGGATACCTATCGCAGCAAAGATGAGAACAAGACAATAGACAGAGATAGGGAGCGAGACCATGTTTTGGATAAAGTAAAAACACCAGATAACAAAAAACTTTTGGATGCGAAACAGTTGATTGATATGATTCCAAAGACAAAAGAGGAATTATTCTCATATGATATAAATTGGGCTATTTATGAAAAGCATGCACTACATGAGAGAATGAGACCGTGGATTTCAAAAAAGATAACAGAGTTTTTGGGGGAGGAGGAAACCACTCTTGTGGATTACATAGTTTCAAGTACTCAGGAACACGTAAAGGCATCTCAGATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGAATGCTCATCTTCGAAATAAAAAAGGTAGAGACTGGTCTAGCTTTCAGAACAAAAGCATGA 3450 45.8 MTISFSEKVKKEWLLGRGPKASKDNELSPWLLLDSNLLKNPWVLKSLLRLFPYSLVSRAQRTPITSSENLKDKPGSFQLPCDLLSTSMADSSSSPATLDSNPQAAEPENPNSQANKPESAASSFPPPQSLPPTSLSVGINPTLHPPLVSTPQPPPSLSYAPSPLSGAVAVPPTAPSFRPVPLSAHHFSPMPGTGMLNPSYPNPGVQPPGVSSVAAPAPGMASGGTGAVPLPVPQPMMAYQVPPGQVPNPAMRPYATMPNGFAAVPTATPQGAFPLAAFCLLIEYGEKGWKASYCLENSQLQLLFWILLVVILDTVPGYLNCQKQTMLAPECSFALFLRLSMHSAADNFHSYAAIVYMLWILIFFFICAGIPRFPSPYPAMIRTPFPPRPPGAMGMVPAMPRPPIPGIPGVRPIIPPVVRPAVLPSVTPAEQPQTTIYIGRIAQSVDNDFMLSLLQLCGPVKSWKRAQNPSDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELVLKGTQATRDYLKRYVEKKAENSKKLKETQVSETKEEEAATTNVARNETSKPSAEDSKEDNDSGEKDLDIARSAVLSDEDRDADRVASEKLTNALEERLKSRPLPPPPLMTTADVSGNSSAEPFAKLKDGEADTDVLKPDAADDRNDDDTTSDHKQTSEQDKPETSSPDRSRRYDRRSRERDRERDLKRDKEREIERYERETERERARKEREQRRKFEEAERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSVDRQKEEEEIAEAKRKAEEEQLQKQKDPLKLVSGQMSNVNEKTILAEESANEIKVMASERESELDSSCDNHIGDGILQNGSGDELSTIPSETRHSGGLPAKRLGFGLVGSGKRTAVPSVFHEEEDDEAQKEKKMRPLVPIDYSAEELQAVQPASTGALPPNLAAAAEFAKRISNVNSKEEKSDGERERGRRSGEKSGHRDRNDEDTYRSKDENKTIDRDRERDHVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRTKA 1149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34781417 34787248 - ClG42_05g0272700.10 Clacu05g2727 250474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2727 1149 MobiDBLite consensus disorder prediction 917 939 - -
Clacu05g2727 1149 SMART rrm1_1 435 508 IPR000504 GO:0003723(InterPro)
Clacu05g2727 1149 SUPERFAMILY PWI domain 1070 1137 IPR036483 -
Clacu05g2727 1149 Gene3D PWI domain 1028 1144 - -
Clacu05g2727 1149 MobiDBLite consensus disorder prediction 739 834 - -
Clacu05g2727 1149 Coils Coil 686 735 - -
Clacu05g2727 1149 MobiDBLite consensus disorder prediction 146 160 - -
Clacu05g2727 1149 MobiDBLite consensus disorder prediction 556 602 - -
Clacu05g2727 1149 Pfam RNA recognition motif 436 505 IPR000504 GO:0003723(InterPro)
Clacu05g2727 1149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 434 519 IPR000504 GO:0003723(InterPro)
Clacu05g2727 1149 CDD RRM_RBM25 434 517 IPR034268 -
Clacu05g2727 1149 MobiDBLite consensus disorder prediction 527 547 - -
Clacu05g2727 1149 SMART pwi_2 1065 1138 IPR002483 -
Clacu05g2727 1149 Gene3D - 427 547 IPR012677 -
Clacu05g2727 1149 Coils Coil 796 823 - -
Clacu05g2727 1149 Coils Coil 522 542 - -
Clacu05g2727 1149 MobiDBLite consensus disorder prediction 739 826 - -
Clacu05g2727 1149 MobiDBLite consensus disorder prediction 856 939 - -
Clacu05g2727 1149 SUPERFAMILY RNA-binding domain, RBD 389 507 IPR035979 GO:0003676(InterPro)
Clacu05g2727 1149 FunFam RNA Binding Motif protein homolog 1028 1144 - -
Clacu05g2727 1149 Coils Coil 739 766 - -
Clacu05g2727 1149 ProSiteProfiles PWI domain profile. 1052 1149 IPR002483 -
Clacu05g2727 1149 MobiDBLite consensus disorder prediction 527 727 - -
Clacu05g2727 1149 MobiDBLite consensus disorder prediction 974 1025 - -
Clacu05g2727 1149 MobiDBLite consensus disorder prediction 80 123 - -
Clacu05g2727 1149 MobiDBLite consensus disorder prediction 631 727 - -
Clacu05g2727 1149 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 88 1149 IPR053294 -
Clacu05g2727 1149 MobiDBLite consensus disorder prediction 66 165 - -
Clacu05g2727 1149 Pfam PWI domain 1072 1135 IPR002483 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2727 K12822 - - csv:101214372 1093.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47