Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2733 ATGTCTTCTTCAAACGATACTTCTTCTCCTTCGTCGGATTCTATTTCAGATTCAAGTTTGCCGCCTGAAGCTTTGGATTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTTCTCCTACTCCCTCTTCTCCTCCACCCTCACCGCAGACAGATGGTTTTTCATCGATGATATTGAATCATGATGATGGTCTTCTGCCGTCGACTCTTTCATCCGCAACTATAGCTCCACCTATCGACGACCTAGTTTCACCATCTTCCTCACCTCCAGCTCCTCCAGATCCTGGAACTACACCGCCGGCCCCTACTGGCGACTCCGATTCAAATGCATCTGGCGACAATCCCTCGCCACCGCCTGAAGATTCTGCTTCGCCACCACCGTCTCCTCAGCCGCGGCCTCATCCACCACCGCCTTCACCACCGCCTCCACAACAGCCGTCTCTGGTTGGCGTCGTTAATCCTCCACCTACCCCTGTTCCGACTACAAAAGCATCTTCGACACCTCCAGGAAGCCCACCTTCTCCAATATCTGAGGATGAACCCTTTGTCCCGGTGGATCAGAGCGCCGTTCAGACTCCTAATACAGACAAGGAGCCTCCACCATCTGAACCAACGGATGCCCTTCCTCCATCAGAAAATCCAGTCACGATTCCTTCACCAGCTGCAAACCCGGCGACGGGGAAACGAACTCCGGGTCCACCTCAAGGAATTGCTACTCCCACATCAGAGTCTAACATTCTTTCACCTCCCACAACCACATTCACATCCACATCCACTCGCACTCCGAACAACTCACCTCATTTCGCCGACTCAACGCCAGTGAAATCACCATTAGGGCAGTCCAAGGCACCATCGTCTGGTTCAAGTAGTCAAACCGATGTTGCAGTAGGCGCTGCAGTCGCTGGAGTTTTCGTAATCGTTTTGGTTGCTGTGGTTTTTATGTTCACAAGGAAGAAGAAAAGACGGAGAGAGATGTATACGGGCCCCTACATGCCTCCTAATAATTTTGGTGTGAAATCAGATGGAAATTACTATCCACATCAACATGGGGGTAACTCTGGTTCTACTGAAGGCTTCTATACTCAGGTCCCACATACTCCCATTGGAAATAGCTTTGGGAGTCAAAGAGGGACAGGATACAGTGGCAGTGGAACAGAGTCAGGTGTGATAAACAGTGCCAAGTTCTTCTTTAGCTATGAAGAATTGATGGAGATTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTGGCTTCCAGAAGGGAAGTCGGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGGGAATTCAAGGCAGAAGTTGAGATTATCAGTCGTGTTCATCATCGACATTTGGTGTCTTTAGTGGGCTATTGCGTCTCTGAGCATCATAGATTGCTCATCTATGAGTTTGTTCCTAATAAGACTCTTGAGCATCATCTCCATAGCGGTAATGGAGTGCCTGTGTTGGATTGGTCCAAAAGACTCAAAATCGCTTTAGGAGCCGCAAAGGGTTTGGCATATCTTCATGAAGATTGTCATCCCAGAATTATCCACCGAGACATCAAGTCAGCCAACATTTTGCTGGATGACGCTTTTGAGGCGCAGGTCGCAGATTTTGGACTTGCGAAACTGACAAATGATACACACACTCACGTTTCCACTCGTGTCATGGGGACATTTGGATACATGGCACCCGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTATTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCAACTCAGCCCCTGGGGGATGAGAGTTTGGTTGAATGGGCTCGTCCACACCTCCTGCACGCCCTTGAAACCGGGGAGTTTGACGGATTGATAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGTGTTCGTCATTCCGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTGAGAGCACTAGACATTGAAAGTGACATTTCTGACCTCTCCAATGGTGTTAAATATGGCCAAAGCACCATCTATGATTCTGGACAATACAATCAAGACATTTCTAAATTCAGAAGAATGGCACTCGGTTCAGACAGCTTCGAATACGATATTTACAGTAGCGAATACAATTCCAGAGAAATGACTGCAAGTCGTGAATCATGGAGATTCAACACTAACTCAAGTGGTGAATCAGAAACTCAAGCTTTTAAAGGACGAACTGGGGCACAACAAAGTCACCATAGTGGTCGACAATTCTAA 2334 48.33 MSSSNDTSSPSSDSISDSSLPPEALDSSSSPPPPPPPSPTPSSPPPSPQTDGFSSMILNHDDGLLPSTLSSATIAPPIDDLVSPSSSPPAPPDPGTTPPAPTGDSDSNASGDNPSPPPEDSASPPPSPQPRPHPPPPSPPPPQQPSLVGVVNPPPTPVPTTKASSTPPGSPPSPISEDEPFVPVDQSAVQTPNTDKEPPPSEPTDALPPSENPVTIPSPAANPATGKRTPGPPQGIATPTSESNILSPPTTTFTSTSTRTPNNSPHFADSTPVKSPLGQSKAPSSGSSSQTDVAVGAAVAGVFVIVLVAVVFMFTRKKKRRREMYTGPYMPPNNFGVKSDGNYYPHQHGGNSGSTEGFYTQVPHTPIGNSFGSQRGTGYSGSGTESGVINSAKFFFSYEELMEITSGFSRQNILGEGGFGCVYQGWLPEGKSVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSEHHRLLIYEFVPNKTLEHHLHSGNGVPVLDWSKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTHTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPHLLHALETGEFDGLIDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRALDIESDISDLSNGVKYGQSTIYDSGQYNQDISKFRRMALGSDSFEYDIYSSEYNSREMTASRESWRFNTNSSGESETQAFKGRTGAQQSHHSGRQF 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34834044 34837110 + ClG42_05g0273300.10 Clacu05g2733 250480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2733 777 MobiDBLite consensus disorder prediction 1 290 - -
Clacu05g2733 777 MobiDBLite consensus disorder prediction 82 99 - -
Clacu05g2733 777 Gene3D Phosphorylase Kinase; domain 1 377 483 - -
Clacu05g2733 777 MobiDBLite consensus disorder prediction 117 178 - -
Clacu05g2733 777 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 258 718 IPR047117 -
Clacu05g2733 777 Gene3D Transferase(Phosphotransferase) domain 1 484 696 - -
Clacu05g2733 777 MobiDBLite consensus disorder prediction 748 777 - -
Clacu05g2733 777 ProSitePatterns Protein kinases ATP-binding region signature. 414 436 IPR017441 GO:0005524(InterPro)
Clacu05g2733 777 MobiDBLite consensus disorder prediction 26 48 - -
Clacu05g2733 777 MobiDBLite consensus disorder prediction 196 216 - -
Clacu05g2733 777 MobiDBLite consensus disorder prediction 1 25 - -
Clacu05g2733 777 SMART serkin_6 408 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2733 777 CDD STKc_IRAK 414 683 - -
Clacu05g2733 777 MobiDBLite consensus disorder prediction 234 290 - -
Clacu05g2733 777 FunFam Proline-rich receptor-like protein kinase PERK8 381 483 - -
Clacu05g2733 777 ProSiteProfiles Protein kinase domain profile. 408 688 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2733 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2733 777 MobiDBLite consensus disorder prediction 100 116 - -
Clacu05g2733 777 FunFam proline-rich receptor-like protein kinase PERK8 484 697 - -
Clacu05g2733 777 Pfam Protein tyrosine and serine/threonine kinase 411 680 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2733 777 SUPERFAMILY Protein kinase-like (PK-like) 389 682 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2733 Clacu-Chr5:34834044 Clacu11g0384 Clacu-Chr11:3501975 3.30E-132 dispersed
Clacu11g1854 Clacu-Chr11:29679714 Clacu05g2733 Clacu-Chr5:34834044 7.40E-64 dispersed
Clacu05g2733 Clacu-Chr5:34834044 Clacu11g0675 Clacu-Chr11:6517974 4.30E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73605 PF07714 PK_Tyr_Ser-Thr 2.30E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2733 - - - 0.0