Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2742 ATGAACCATCTCTTTGAACTGCCTGAAAAGATTTGTTATGTGCAATGTGGAATTTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCGGCAGCTTATCGATGGCGGTGACTGTGACGTGTGGCCACTGCTCGAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGCCCAAAGAAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTCTGACAGTTTCAAAAGACCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGCCACACCTCCTTTTGTAAACAAACCTCCTGAGAAGAGACAACGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCACAATCCGGAAATGACTCACAAGGAGGCCTTTAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAACTGA 510 43.53 MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTEN 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34895246 34896316 - ClG42_05g0274200.10 Clacu05g2742 250489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2742 169 Pfam YABBY protein 8 162 IPR006780 GO:0007275(InterPro)
Clacu05g2742 169 CDD HMG-box_SF 119 165 - -
Clacu05g2742 169 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 117 169 IPR009071 -
Clacu05g2742 169 SUPERFAMILY HMG-box 104 160 IPR036910 -
Clacu05g2742 169 Gene3D High mobility group box domain 109 169 IPR036910 -
Clacu05g2742 169 PANTHER PROTEIN YABBY 6-RELATED 8 165 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2742 Clacu-Chr5:34895246 Clacu06g1211 Clacu-Chr6:22794077 1.60E-31 dispersed
Clacu05g2742 Clacu-Chr5:34895246 Clacu08g1948 Clacu-Chr8:28467067 5.90E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47802 PF04690 YABBY 5.20E-58 CL0114 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2742 K25796 - csv:101211641 316.235