Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g2742 | ATGAACCATCTCTTTGAACTGCCTGAAAAGATTTGTTATGTGCAATGTGGAATTTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCGGCAGCTTATCGATGGCGGTGACTGTGACGTGTGGCCACTGCTCGAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGCCCAAAGAAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTCTGACAGTTTCAAAAGACCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGCCACACCTCCTTTTGTAAACAAACCTCCTGAGAAGAGACAACGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCACAATCCGGAAATGACTCACAAGGAGGCCTTTAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAACTGA | 510 | 43.53 | MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKEACREMNSGKFSDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTEN | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 34895246 | 34896316 | - | ClG42_05g0274200.10 | Clacu05g2742 | 250489 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g2742 | 169 | Pfam | YABBY protein | 8 | 162 | IPR006780 | GO:0007275(InterPro) | |
Clacu05g2742 | 169 | CDD | HMG-box_SF | 119 | 165 | - | - | |
Clacu05g2742 | 169 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 117 | 169 | IPR009071 | - | |
Clacu05g2742 | 169 | SUPERFAMILY | HMG-box | 104 | 160 | IPR036910 | - | |
Clacu05g2742 | 169 | Gene3D | High mobility group box domain | 109 | 169 | IPR036910 | - | |
Clacu05g2742 | 169 | PANTHER | PROTEIN YABBY 6-RELATED | 8 | 165 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g2742 | Clacu-Chr5:34895246 | Clacu06g1211 | Clacu-Chr6:22794077 | 1.60E-31 | dispersed | |
Clacu05g2742 | Clacu-Chr5:34895246 | Clacu08g1948 | Clacu-Chr8:28467067 | 5.90E-26 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47802 | PF04690 | YABBY | 5.20E-58 | CL0114 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g2742 | K25796 | - | csv:101211641 | 316.235 |