Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2744 ATGACGAGATATCTCAAGGTTCATAGTATAAGCACTATGTTGGTGCGGTTCCCTCCAAGATTGAATGAAGGCCGAGCGACGAAAATATCTGGAAGGTCAGTGGGAAGCTCTGCCTTATCCATCTTCTCCAACGAGAGGAGAGTGAAAGAAAGGGAAGGTACTGTAACAATGGCAAGAATCCCATCATTGCCAGGCCTCAACCTATTCTCTTCACTCCCTTCACCTCCACCGCCTCACGATCCCTCACCCACTTCTTCTCCTTCAACACCCATTCCAATTCCCAAATACCCTCCTCCCAAATCCCGCACCCTTCGGACCAACAATCCTCCCAAACCCCCTAATCCTGCTCTCAAAACCTTCCACCGCCGCTCCAATTACTACAAGCCCGTCAAAGATGGAGTCATCTCATCCCACGGCGATCGCTCCGTCGTCATCGGCGATTCCGGTGTGTCGTATCTCCTCCCCGATGCTCCATTCGAGTTCCAATACAGTTACTCTGAGACCCCCAAAGTCAAGCCCATTGCAATTCGCGAACCAGCGTTTCTACCCTTTGCACCCCCGACGATGCCGAGGCCATGGACCGGCAAAGCTCCATTGAAGAGCTCGAAGAAGAAAATCCCTCTCTTCGATTCCTTCAATCCGCCCCCTCCTGGTACCAACGGAGTTAAGCAAGTCCAGATGCCTGGCCCGTTCCCGCTTGGCCAGTTTCCCAAGGAGGGGAAAAGCAGAGAGGAGATTCTTGGGGAACCCCTTAAGAATTGGGAGATTCGCATGCTGGTGAAACCCCATTTGTCACATAATCGCCAGGTTAATCTTGGAAGGGATGGACTTACGCATAATATGTTGGAACTGATACATTCGCATTGGAAGCGGCAACGTGTCTGTAAAGTTCGTTGCAAAGGTGTTCCCACAGTAGATATGGATAATATCTGCCATCATATCGAGGAAAAAACAGGTGGAAAAATAATTCACCGAGTTGGTGGTGTATTATATCTATTCCGAGGTAGAAACTACAATTATCGTACTCGCCCTCAATACCCTGTAATGCTCTGGAAACCTGCAGCTCCTGTGTATCCAAAACTTATTCAAGAAGCTCCAGAAGGGTTAACAAAAGAGGAAGCTAATGTTCTAAGGATGAAAGGGAAAAATCTTTTGCCAATATGTAAATTAGCAAAAAATGGTGTGTACATTTCCTTAGTGGATGACGTGAGGCATGCTTTTGAAGGAAGCATTTTGGTGAAGATTGATTGCACTGGCATGCATGAAAGTGATTATAAAAAGTTGGGTGCTAAACTGAAGGAATTGGTTCCTTGTGTGTTATTATCATTTGACAACGAACAGATATTGATGTGGAGGGGAAAGGATTGGAAAGTTATTTCAGACGATCGTTCTGCTCCACTTCCTACTCGGGTTAGCTCAAATGATTGTTTGGGTTCATCTGGCGAGTCTATTGAGAATGGTGTCCTCTTACAAGGCAATCATCATACTATCAAAACTAGCCCGAAAATGAAGCTGCTATGGGAGCGTGCCATCGATTCAAACAAGGCATTGTTGCTAGATGAGATTGGTCTTGCTCCTGATGACCTTTTAGAGAAAGTTGAGGAGTTTGAGAGAATTTCACAAGCAACTGAGCACTCTTATCCAGCATTTATCATGTCAAGTGAAGATGTCAGCAACCCAGTTGACAGCCCTGGAAGTCGGGATCAAAGTGAAGGTAACTACAACTCCGATGACGATGTAGGTTGGGAAGGCGACCTTTTTGATAATGTTGACCCGTCAGTCCCTTTAGGATCATTACCTGTTGATATTATAGCAAAGAAGCTGAGCCCTGAATAG 1836 46.13 MTRYLKVHSISTMLVRFPPRLNEGRATKISGRSVGSSALSIFSNERRVKEREGTVTMARIPSLPGLNLFSSLPSPPPPHDPSPTSSPSTPIPIPKYPPPKSRTLRTNNPPKPPNPALKTFHRRSNYYKPVKDGVISSHGDRSVVIGDSGVSYLLPDAPFEFQYSYSETPKVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTNGVKQVQMPGPFPLGQFPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKEEANVLRMKGKNLLPICKLAKNGVYISLVDDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKVISDDRSAPLPTRVSSNDCLGSSGESIENGVLLQGNHHTIKTSPKMKLLWERAIDSNKALLLDEIGLAPDDLLEKVEEFERISQATEHSYPAFIMSSEDVSNPVDSPGSRDQSEGNYNSDDDVGWEGDLFDNVDPSVPLGSLPVDIIAKKLSPE 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34903305 34908527 + ClG42_05g0274400.10 Clacu05g2744 250491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2744 611 Gene3D - 369 463 IPR035920 -
Clacu05g2744 611 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 97 608 IPR044599 GO:0000373(InterPro)
Clacu05g2744 611 SMART CRS1_YhbY_2 251 334 IPR001890 GO:0003723(InterPro)
Clacu05g2744 611 SMART CRS1_YhbY_2 369 452 IPR001890 GO:0003723(InterPro)
Clacu05g2744 611 MobiDBLite consensus disorder prediction 554 597 - -
Clacu05g2744 611 Gene3D - 250 346 IPR035920 -
Clacu05g2744 611 SUPERFAMILY YhbY-like 369 457 IPR035920 -
Clacu05g2744 611 FunFam CRS2-associated factor 1, chloroplastic 250 345 - -
Clacu05g2744 611 MobiDBLite consensus disorder prediction 70 116 - -
Clacu05g2744 611 FunFam CRS2-associated factor 1, chloroplastic 368 463 - -
Clacu05g2744 611 MobiDBLite consensus disorder prediction 66 120 - -
Clacu05g2744 611 Pfam CRS1 / YhbY (CRM) domain 369 452 IPR001890 GO:0003723(InterPro)
Clacu05g2744 611 Pfam CRS1 / YhbY (CRM) domain 251 334 IPR001890 GO:0003723(InterPro)
Clacu05g2744 611 MobiDBLite consensus disorder prediction 554 571 - -
Clacu05g2744 611 ProSiteProfiles CRM domain profile. 367 463 IPR001890 GO:0003723(InterPro)
Clacu05g2744 611 SUPERFAMILY YhbY-like 250 343 IPR035920 -
Clacu05g2744 611 ProSiteProfiles CRM domain profile. 249 345 IPR001890 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2744 K27710 - - csv:101217796 978.393
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0224 Clacu-Chr5:1965802 Clacu05g2744 Clacu-Chr5:34903305 2.70E-77 dispersed
Clacu05g1589 Clacu-Chr5:22845179 Clacu05g2744 Clacu-Chr5:34903305 4.20E-74 dispersed
Clacu05g2744 Clacu-Chr5:34903305 Clacu11g0368 Clacu-Chr11:3363142 2.40E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g667 . . . . . Bpe10g00846 . Bma15g00177 . . . . . . Sed06g1652 . Cpe01g01543 Bhi07g01749 Tan04g1255 Cmetu10g0674 Lac13g0187 Hepe10g1626 . . Cla05g02555 Cam05g2743 Cec05g2775 Cco05g2815 Clacu05g2744 Cmu05g2596 Cre05g2711 . . . . Lsi04g00562 Csa05g02323 Chy10g00891 Cme10g00538 Blo06g00885 . . . . . . . . . . Cma04g01743 . Car04g01776 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35