Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2747 ATGGAAGAAATGTACGGTTTACAATCCACGGCGGAGTATTCAGATAAGGCCTTGATGTCGCCGGAGAATCTGATTCTTCCGCCGGATTATCAGAGCCTTCTTGTGAGTTCTGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCAGCGGCGGCATCGGCGATTTCAGAAGCGGAAGCAGCATCGATCACGCCGGAAATTCGACGTGAAGAAGATATGGTGAACGTGATCAAAGCGAAAATTTCTTCTCATCCCACTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTGGGCGTCGATCCTGAGCTCGATGAATTCATGGAAACATACTGCGATATGTTGGTGAAGTACAAATTAGATCTCAAAAGGCCTTTCGACGAAGCAACTACGTTCTTGAATAAGATCGAACTGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGATGACGGTGCTGTCTCATCGGATGAAGAATTGAGCGGTGGAGAGATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTCTACGTAGATTTGGGAGTCATATTAGTACCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACACTCTTTGAATGGTGGAACGTTCACTATAAATGGCCATATCCTACGGAAGCCGACAAGGTTGCATTGGCAGAGAGAACGGGACTAGATCAAAAGCAAATTAACAATTGGTTCATAAATCAGAGGAAACGCCACTGGAAGCCATCAGAGAATATACAGTTTGAAGGAATGGATGGGCTTTCTTCTGGTAGATTCTTCAGAGAGGACTGA 975 46.46 MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVSSGEFRDRIPVFGSNELLSAAASAISEAEAASITPEIRREEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKLDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSDDGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLFEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENIQFEGMDGLSSGRFFRED 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34935468 34942202 + ClG42_05g0274700.10 Clacu05g2747 250494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2747 324 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677(InterPro)
Clacu05g2747 324 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu05g2747 324 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu05g2747 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 133 312 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu05g2747 324 SUPERFAMILY Homeodomain-like 241 315 IPR009057 -
Clacu05g2747 324 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu05g2747 324 Gene3D - 239 311 - -
Clacu05g2747 324 SMART HOX_1 242 307 IPR001356 GO:0003677(InterPro)
Clacu05g2747 324 SMART KNOX2_2 130 181 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu05g2747 324 CDD homeodomain 252 304 IPR001356 GO:0003677(InterPro)
Clacu05g2747 324 SMART KNOX1_2 80 124 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu05g2747 324 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu05g2747 324 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677(InterPro)
Clacu05g2747 324 SMART ELK_2 220 241 IPR005539 GO:0003677(InterPro)
Clacu05g2747 324 Pfam ELK domain 220 241 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1924 Clacu-Chr5:28447496 Clacu05g2747 Clacu-Chr5:34935468 1.20E-71 dispersed
Clacu05g2747 Clacu-Chr5:34935468 Clacu08g1841 Clacu-Chr8:27695882 2.80E-64 dispersed
Clacu02g1533 Clacu-Chr2:28780153 Clacu05g2747 Clacu-Chr5:34935468 4.50E-71 transposed
Clacu05g2747 Clacu-Chr5:34935468 Clacu06g1813 Clacu-Chr6:28667260 1.20E-62 wgd
Clacu05g2747 Clacu-Chr5:34935468 Clacu08g1940 Clacu-Chr8:28411673 2.20E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47803 PF03791 KNOX2 5.20E-24 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2747 - - - 0.0