Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2748 ATGAAACCCTACAACTTCTCCTTTGCAATTCTCTTCCTTCTAATACTCTTGTTATTTCGTTTTCTAATCCAATCGGCGGCTGATTCCAGAGCTACTCAGGCGGCTCTCATATGTTCCAACAACACTGCTTCGCTGCCGGAGCGATCGACCTTTGTGTCGAATTTCTTGGACTCTATGGATGCGGTTACTCCTCTTATTGCTTCACAGCGATTTGCAGCCGTTGTGAATGGGACTGGAAATACGTCTGTTTATGCTTTTGGAGAGTGTATGAACGATCTTACTCAATCGGATTGTGATCTCTGTTTTGCCCAGATGAAAACTCAGATCCTGCGGTGTCTCCCCTTTCAGCTTGCTACTCGAGGGGGCAGACTTTTCTATGACGGGTGTTATGTTAGGTATGATTATTATAACTTCTTTAACGAATCCTTGAGTGCTGTGGATAGGACTGTATGTGGGAAATCGGATTACAGTGGGAATCGGACTATTTTTAGTGACAATGCTATGAAATTGGCGAGGAATTTGAGTGTAGTAGCGCCCAAGAACGATGGGTTTGCTGTGGGATTGGTGAATTTGAGAAATGTGTCCGTTTATGGATTGGGTCAGTGTTGGAAATTTGTGAAAGGGACTTCTTGTTCCAAGTGTTTGGTTGATGCAGCTAAGGACATTGGTTCTTGTCCTCCAAAAACTGAAGGAAGGGTGTTGAATGCTGGCTGTTACTTCAGATATTCAACTGAACGATTTTATTTCAACAGCACGGCAACCGCTACTGGAGGAAATGGAAGTCGTCGTCTGGCGGTAATTTTGGCTTCAGTATCTGCTGCTGTGGCTGCTGCATTGATTATTTCAACGGTTGTTTTCTGTGCCAGAAGGAGAGTAGTCAGGAAACGCAAAGAGAAAAAGCAACTCGGTCCTCTTGTGGCTATTGTTAACAAGTCCAAGCTTAATTTTTCATATGAGACTCTTGAGAGGGCCACAAATTACTTTGACCAATCCAATAAACTAGGACAAGGAGGTTCTGGTTCAGTTTATAAGGGAACCCTATCAGATGGCAGAGTTGTAGCAATTAAGAGGCTTTTCTTCAATACAAGACAATGGGTGGACCATTTCTTTAATGAAGTAAATCTTATTAGCGGCATCCGACACAAAAATCTTGTAGGGCTGCTGGGATGCAGCATTACAGGCCCTGAAAGCCTCCTTGTTTATGAATACGTGCCAAATCAGAGCTTGCACGATTACCTGTTTGGTAACAAGAATGTCCAGCCACTGAGTTGGGAATCCAGGTTTAAGATTGTCTTAGGCACAGCTGAAGGCTTGGCTTATCTTCATGAGGAGTCAAATGTGAAAATCATTCATCGCGACATAAAACTAAGCAATATTCTGCTGGATAATGATTTCACTCCGAAGATTGCTGATTTTGGACTTGCTAGACTGCTTCCCGAAGATAAGACACACATTAGTACCGCAATTGCTGGCACACTAGGTTACATGGCTCCTGAATATGTAGTGCGTGGCAAGTTGTCTGAAAAGGCCGATGTTTACAGTTTTGGAGTTTTTGCCATTGAAGTCATCACTGGAAGGAGGAATAATCACTTCTATCAAGATTCAACGTCCATCTTACAAAAGGTATGGAATTTGTATGGAGAGGGAAAGCTATATGCAGCTGTCGATCCTATATTAGCGGGTGATTATCCACGAGACGAAGCATCTCGGTTGCTTCAAATAGGTCTAGTTTGCGTGCAAGCCTTTGCTGATCTAAGGCCATCCATGTCGATGGTTGTGAAAATGCTTACAGCAAATTACGAGATTCCCCAGCCAAAACAGCCTCCATATCTTCATCCTTCAAGTGGAAACATAAAATCCCAAAATTCTTCAGACTCATCCAATCCCATTTTAGAGTTTGATATACATGAAGGGAAAACAAACAAAAGCTCACATTAG 1938 42.72 MKPYNFSFAILFLLILLLFRFLIQSAADSRATQAALICSNNTASLPERSTFVSNFLDSMDAVTPLIASQRFAAVVNGTGNTSVYAFGECMNDLTQSDCDLCFAQMKTQILRCLPFQLATRGGRLFYDGCYVRYDYYNFFNESLSAVDRTVCGKSDYSGNRTIFSDNAMKLARNLSVVAPKNDGFAVGLVNLRNVSVYGLGQCWKFVKGTSCSKCLVDAAKDIGSCPPKTEGRVLNAGCYFRYSTERFYFNSTATATGGNGSRRLAVILASVSAAVAAALIISTVVFCARRRVVRKRKEKKQLGPLVAIVNKSKLNFSYETLERATNYFDQSNKLGQGGSGSVYKGTLSDGRVVAIKRLFFNTRQWVDHFFNEVNLISGIRHKNLVGLLGCSITGPESLLVYEYVPNQSLHDYLFGNKNVQPLSWESRFKIVLGTAEGLAYLHEESNVKIIHRDIKLSNILLDNDFTPKIADFGLARLLPEDKTHISTAIAGTLGYMAPEYVVRGKLSEKADVYSFGVFAIEVITGRRNNHFYQDSTSILQKVWNLYGEGKLYAAVDPILAGDYPRDEASRLLQIGLVCVQAFADLRPSMSMVVKMLTANYEIPQPKQPPYLHPSSGNIKSQNSSDSSNPILEFDIHEGKTNKSSH 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34942248 34946434 - ClG42_05g0274800.10 Clacu05g2748 250495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2748 645 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 167 626 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Clacu05g2748 645 FunFam Cysteine-rich receptor-like protein kinase 3 147 247 - -
Clacu05g2748 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2748 645 Pfam Salt stress response/antifungal 38 135 IPR002902 -
Clacu05g2748 645 Pfam Salt stress response/antifungal 151 244 IPR002902 -
Clacu05g2748 645 Gene3D - 144 247 IPR038408 -
Clacu05g2748 645 Gene3D - 31 138 IPR038408 -
Clacu05g2748 645 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Clacu05g2748 645 CDD STKc_IRAK 334 597 - -
Clacu05g2748 645 Gene3D Phosphorylase Kinase; domain 1 288 403 - -
Clacu05g2748 645 FunFam Cysteine-rich receptor-like protein kinase 2 294 403 - -
Clacu05g2748 645 MobiDBLite consensus disorder prediction 606 645 - -
Clacu05g2748 645 ProSiteProfiles Protein kinase domain profile. 328 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2748 645 FunFam Cysteine-rich receptor-like protein kinase 2 404 604 - -
Clacu05g2748 645 SUPERFAMILY Protein kinase-like (PK-like) 314 626 IPR011009 -
Clacu05g2748 645 MobiDBLite consensus disorder prediction 611 630 - -
Clacu05g2748 645 Pfam Protein kinase domain 329 530 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2748 645 SMART serkin_6 328 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2748 645 Gene3D Transferase(Phosphotransferase) domain 1 404 607 - -
Clacu05g2748 645 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524(InterPro)
Clacu05g2748 645 FunFam Cysteine-rich receptor-like protein kinase 2 31 138 - -
Clacu05g2748 645 ProSiteProfiles Gnk2-homologous domain profile. 144 247 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2748 Clacu-Chr5:34942248 Clacu07g1029 Clacu-Chr7:24717165 7.90E-79 dispersed
Clacu06g0054 Clacu-Chr6:714413 Clacu05g2748 Clacu-Chr5:34942248 5.00E-12 dispersed
Clacu03g1095 Clacu-Chr3:20308184 Clacu05g2748 Clacu-Chr5:34942248 8.10E-48 transposed
Clacu06g1493 Clacu-Chr6:25861916 Clacu05g2748 Clacu-Chr5:34942248 4.00E-81 transposed
Clacu10g1389 Clacu-Chr10:27010902 Clacu05g2748 Clacu-Chr5:34942248 1.30E-150 transposed
Clacu05g2748 Clacu-Chr5:34942248 Clacu08g1938 Clacu-Chr8:28402653 5.70E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73606 PF00069 Pkinase 2.00E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2748 - - - 0.0