Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2751 ATGGAGGTCGACGGCGGAGCTACGGCGGCGGCTCAGCCGAGGAAATTCTCTCTCCCGGTGGACTCCGAACACAAATCCACCAAATTCAACATATTCTCCGTCGCAGCGCCGCACATGCGAACGTTTCATCTCTCGTGGATTTCCTTCTGCGCTTGTTTCATTTCCAGTTTCGCGGCGGCTCCTCTGCTTCCGGTGATCCGCGACAACCTCGACTTAACCGACACCGACATTGGAAACGCCGGAATCGCCTCCGTCTCCGGCGCCGTCTTCGCCCGAATCATGATGGGTTCCGCCTGCGACTTGGTCGGACCACGTCTCGCCTCCGCTTCACTCATTCTCATAACCTCACCGGCGGTTTATTTAACCTCCATAGCTTCATCCCCTGTTTCGTTTCTCCTTGTCCGATTCTTCACCGGCTTCTCCCTCGCTACATTCGTCTCAACCCAATTCTGGATGAGTTCCATGTTCTCCTCCAACGTCGTCGGCACCGCCAACGGTGTCGCCGGCGGCTGGGGGAACCTAGGCGGCGGCGCAACACAGTTAATCATGCCGTATGTTTTCGCCATCATCGAACACATCGGCGCAACGAAATTCACCGCATGGAGAATCGCTTTCTTCATCCCAGCGTTATTCCAAACGCTTTCCGCCTTCGCCGTTCTCCTCCTGGGCGAGGACACTCCAGACGGGAATTTCCGGCGGCTGCAGAAAACAGGGGAGAAGGCGAAAGACGAATTATCGAAAGTTGTGTTGAATGGGGTGAAGAATTACAGGGGATGGATTCTGGCATTGACTTATGGGTATAGTTTCGGAGTGGAATTGACGATTGATAATGTAATAGCGAATTACTTTTACGATAGGTTTAATTTGAATCTGCACACGGCGGGGATAGTGGCGGCGAGTTTTGGGCTGGCGAATCTGTTTTCGAGGCCTTACGGCGGAGTATTGTCGGATGTGGTGGGGAAAAGATTTGGAATGAGAGGGAGGCTGTGGGCTTTGTGGTTGGTGCAAACAATTGGGGGAATTTTGTGTGTGATTCTTGGGTTGGTTAATTCTTTGAGTGCTTCGATTACCATTATGATCGTTTTTTCAGTGTTTGTTCAAGCTGCTTGTGGACTTACTTTTGGTGTTGTTCCTTTCGTCTCTCGAAGGTCATTAGGAGTAATATCGGGGATGACAGGTGGGGGCGGGAATGTGGGGTCGGTGCTGACTCAGCTGATATTCTTCAGAGGCAACAGATACACAAAAGAGAGAGGAATAAGTCTAATGGGAGTGATGATAATAGCTTGCACTCTCCCAATTGCATTGATTTATTTTCCTCAATGGGGCAGTATGTTCTTTGGGCCTTCCTCCAAAATTGCTTCTGAGGAAGACTATTACTTGTCGGAATGGACTTCTGAGGAGAAGGCCAAAGGCTTCCATATGGCTAGCCTTAAGTTTGCTGAGAATAGTCGAACTGAAAGAGGCAAAAACCTTAAGGGAACTGCTGATGCTGATCTTGCCTCCCCTAATGTTTAA 1515 50.3 MEVDGGATAAAQPRKFSLPVDSEHKSTKFNIFSVAAPHMRTFHLSWISFCACFISSFAAAPLLPVIRDNLDLTDTDIGNAGIASVSGAVFARIMMGSACDLVGPRLASASLILITSPAVYLTSIASSPVSFLLVRFFTGFSLATFVSTQFWMSSMFSSNVVGTANGVAGGWGNLGGGATQLIMPYVFAIIEHIGATKFTAWRIAFFIPALFQTLSAFAVLLLGEDTPDGNFRRLQKTGEKAKDELSKVVLNGVKNYRGWILALTYGYSFGVELTIDNVIANYFYDRFNLNLHTAGIVAASFGLANLFSRPYGGVLSDVVGKRFGMRGRLWALWLVQTIGGILCVILGLVNSLSASITIMIVFSVFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGSVLTQLIFFRGNRYTKERGISLMGVMIIACTLPIALIYFPQWGSMFFGPSSKIASEEDYYLSEWTSEEKAKGFHMASLKFAENSRTERGKNLKGTADADLASPNV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34960451 34962842 - ClG42_05g0275100.10 Clacu05g2751 250498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2751 504 FunFam Nitrate transporter 2.1 242 443 - -
Clacu05g2751 504 Gene3D MFS general substrate transporter like domains 35 231 IPR036259 -
Clacu05g2751 504 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 442 IPR020846 GO:0022857(InterPro)
Clacu05g2751 504 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 11 490 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Clacu05g2751 504 Gene3D MFS general substrate transporter like domains 240 443 IPR036259 -
Clacu05g2751 504 Pfam Major Facilitator Superfamily 46 402 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu05g2751 504 SUPERFAMILY MFS general substrate transporter 36 438 IPR036259 -
Clacu05g2751 504 CDD MFS_NRT2_like 42 435 IPR044772 GO:0015112(InterPro)
Clacu05g2751 504 FunFam High affinity nitrate transporter 2.5 34 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0271 Clacu-Chr3:3104179 Clacu05g2751 Clacu-Chr5:34960451 1.40E-174 dispersed
Clacu03g0272 Clacu-Chr3:3117082 Clacu05g2751 Clacu-Chr5:34960451 1.40E-174 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2751 K02575 - csv:101212365 859.366