Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2786 ATGGAGTGCCATTCCTTAATCATTGCTTTCACCACTTTCTTCGCACTTTCACTGATTCCATGCTCTGTCCTAGCCAAACAACCCTGTAATTTTCCGGCTCTCTTCAACTTCGGCGACTCCAACTCCGACACCGGCGGCCTTTCCGCTGTCTTTGGCCAAGCGCCGCCGCCCAATGGGAGGTCCTATTTCCCTGGCCCTGCCGGTCGCTACTCCGATGGCCGTCTTATCGTCGACTTCGTAGCCAAAAGCCTTGGGTTGCCTTATCTAAGCGCGTATCTTGATGCTTTGGGAGCCAATTTCAGTCACGGAGCAAATTTCGCGACTGCTGGTTCCACTATTAGACCTCAAAACACAACGCTACAGCAGAGTGGATTCAGCCCTATTTCCCTCAATGTTCAATACAACCAATTCTATGACTTCCGTCGCAGATCCCAAACCCTTCGAAATCGACTCGGCGGCATCTTTGAGCAATTATTGCCAAAGGAAGAGAGTTTTAGTCGGGCCCTTTACACATTTGATATTGGGCAGAACGATTTGACCAGTGGTTACTTTGCCAACATGACTGTCCATCAAGTTACACTCTATATTCCTCAAGTACTCCACCAATTCTCCGATATCGTCAAGTGGGTGCACAGTCAAGGGGGAAGATTCTTCTGGATCCATAATACGGGCCCAGTGGGCTGCCTTCCATATGTATTGGACCGCAAGCCCGTTCCAGCTTCAGACTACGACCAATATGGCTGCGCCACTCCTTTCAATGACTTGGCCCAATCTTTCAACCGTGGCCTCAAACAAGCTGTCCTTGAGCTTCGCAAAGCTTTGCCCGATGCTGCCATTACCTACGTGGATATTTACTCTCTCAAATATGCTCTTGTTGCCCAACACAAGAAATACGGTTTTGAGTTTCCATTGAGAACTTGCTGTGGACATGGTGGAAAGTACAACTTCAACGTCAAGCTTGGGTGTGGAGGAAAGAAACGAATCAATGGAAAGGATGTTTTGATAGGAAAATCCTGCAAAAACCCAGAGGTTTATGTGAATTGGGATGGTGTTCATTACACTCAGGCAGCTAACAAATGGATCTTTAATCAGATTAAAGATGGTTCTTATTCAGATCCACCTATCCCTTTGAAGATGGCTTGCCAAAGGGCTTTAACTTAA 1161 47.2 MECHSLIIAFTTFFALSLIPCSVLAKQPCNFPALFNFGDSNSDTGGLSAVFGQAPPPNGRSYFPGPAGRYSDGRLIVDFVAKSLGLPYLSAYLDALGANFSHGANFATAGSTIRPQNTTLQQSGFSPISLNVQYNQFYDFRRRSQTLRNRLGGIFEQLLPKEESFSRALYTFDIGQNDLTSGYFANMTVHQVTLYIPQVLHQFSDIVKWVHSQGGRFFWIHNTGPVGCLPYVLDRKPVPASDYDQYGCATPFNDLAQSFNRGLKQAVLELRKALPDAAITYVDIYSLKYALVAQHKKYGFEFPLRTCCGHGGKYNFNVKLGCGGKKRINGKDVLIGKSCKNPEVYVNWDGVHYTQAANKWIFNQIKDGSYSDPPIPLKMACQRALT 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35245758 35248551 - ClG42_05g0278600.10 Clacu05g2786 250533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2786 386 Pfam GDSL-like Lipase/Acylhydrolase 34 365 IPR001087 GO:0016788(InterPro)
Clacu05g2786 386 CDD SGNH_plant_lipase_like 32 369 IPR035669 -
Clacu05g2786 386 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 16 364 - -
Clacu05g2786 386 SUPERFAMILY SGNH hydrolase 37 366 - -
Clacu05g2786 386 Gene3D SGNH hydrolase 22 368 IPR036514 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2786 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1646 Clacu-Chr2:29895353 Clacu05g2786 Clacu-Chr5:35245758 1.40E-87 dispersed
Clacu02g1651 Clacu-Chr2:29916018 Clacu05g2786 Clacu-Chr5:35245758 3.00E-86 dispersed
Clacu05g2786 Clacu-Chr5:35245758 Clacu10g1366 Clacu-Chr10:26761435 2.90E-97 dispersed
Clacu05g2786 Clacu-Chr5:35245758 Clacu03g0343 Clacu-Chr3:3912244 1.60E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g632 . . . . . . . Bma15g00221 . Cmo18g00764 . Cma18g00759 . Car18g00692 Sed04g0578 Cpe09g00538 . Bhi07g01798 Tan04g0156 Cmetu10g1157 . Hepe10g1584 . . Cla05g02593 Cam05g2784 Cec05g2821 . Clacu05g2786 Cmu05g2634 Cre05g2750 . . . . Lsi04g00602 . . Cme10g00583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004340 1 1 1 0 1 1 3 1 1 1 1 1 2 1 1 3 1 4 2 1 1 1 1 1 1 1 1 1 1 6 43