Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2790 ATGTTCAATCAGTCAAAACAACCAGAAGTAGAGGTTGGTAGACCTTCTTGGCCACCAACCAGATTCCGCCACGTGTACGATGGTCAAAAGGAAAACCAGAAGAGTCGGTTTGGCTTCCTCTTTTCAAGGTTCCAAAACTCTGCTACTGCTCTTTTCAAACACCCTTCTATTCAAATTCGGGGTTTCGATTCTTCAAGAATAAGCTTCAAATGGATACGAGTCAAAGAGGTATTATATACTTTTGAGATGGATGAAGAAAAGAGAGGGGGCGGGCTCGCCGGTTGTACTCGGAAGGCATTTTTTCGGTCGGCGTCTTGGACTGACCGGTCGCCGTCAAAGCCCCATCATAATCGAAGCTTAGTGCCTAACAGCAATAAAGCTCGATCATGTCTGCCGCCGCTGCAGCCGCTTTCAATTAGCCGCCGGAATGTTGAGGAGTGGCCACGAGCGGGTTCTGATGATCTTGGCGTTTGGCCAAACCCAGAAACTCCGAGAGAGCTTGTTAATAAGTCGTCTCAGAGTTCTGAGTGTGAACAACCTGTGAGGGAATTTCAGTTTAAGAAGGATAAACTTGCGTTCTTTGATAAGGAATGCTCGAAGATTCTTGAACATGTGTATTTAGGGAGTGATTCTGTGGCTAAGAATCGACAAGTTCTGAGACAGAATGGGATCACTCATGTGCTGAATTGTGTTGGCTTTGTCTGTCCTGAGTACTTCAAAGGTGAATTTGTGTACAAAACTCTTTGGTTGCAAGATAGTCCCTCTGAGGATATTACTAGTATCCTCTACAATGTGTTTGATTACTTTGAAGATGTTCATGAGCAAGGCGGTCGGGTTTTCGTGCATTGTTGCCAAGGAGTGTCTCGGTCGACCTCTCTGGTGATTGCGTACCTCATGTGGAAGGAAGGACGAAGTTTTCACGATGCTTTTCAATATGTAAAGGCTGCTCGAGGGGTAGCTAATCCAAACTTGGGTTTTGCTTGTCAATTATTGCAGTGCCAGAAGCGAGTACATGCAGTGCCTGCTAGCCCGAATTCGATTTTGAGGATGTATAGGATGGCTCCTCATTCGTCGCATGATCCGCTTCATCTTGTACCTAAGTTGTTGAACACTCCGAGTGTTCAAGGACTTGATTCTCGTGGTGCATTTGTTGTGCACGTTCCTTCAGCTATCTATGTCTGGAAAGGGGAGACATGCGGCTCTGTGATGTTGAATACGGCTAATGCAGCAGCGTCGCAGGTCATTCGATATGAAAAAGCAAAAGGCCCCATCCATAGCATCAAAGAAGGTGAAGAACCATTTGAATTCTGGGATGCACTTATGATTGGCCAAAATTTGACTGATAGTTCTGAAGAAGGGAAAGTTCAAAGGCTTGGTAATTTGTCTACCACAGAAGATCACATCTCGAAAATAACAAGTGTGAAGGTGGGTGAACGGAGAGTTGAGGAGTATAATCCAGATTTTGAAATTTTTTACAGGGCAATTTCAGGTGGGGTTGTTCCACCTTTAGATCGATTCAATACTGAATCAGAGAATTATCTTCCGACTAGAGAAAATGGGTGGGACTCGACCAAAAGGAAGTTTGAAAATGAAACTGCAAAAGATATTGCCACATCTTTGTCAGAATTGGACTGTGATACTAGATCACCATTTGATGATGATATGGCTATGACTGCAAATATTGATGAAGATGCAGAAGTACCTGTTTCTTCAATTGATCTTGCATCTCCACCAATTTCACCCACAGCCTATTTGTGTGGTTCACCTGAATCTTTTGACTGTTTTCCAAATAGTAGCCTGGATCAGGAAATAGAAAATTCTAACGAGGAAAGCTCGATCCCAGGCGATCCTTTGTCGTTACCAATTCATCCTCTGGGGTCACCAGATTCATTTTCCTGTTTTCAAGGAGGTACTAGTCCAAAAGTTGGCACAAAATCCCCTTCACTCTCTCCTTCTACATCTGATAATTCTAGTTCTTTTACCTTTTCGCCGTCATCGTCAAATTGGTCTGACTTATCATATATGTCTTCTCGGCAACCTTCACCATCTGACATGGACTCATTGCATCCGGCTGTCCAAAATTCTTCCATCATTGATAATTTTTGTTTACACCACAAAGAAACTCATCCTATATTTGTAGAGTCTTTTTCCTCTTATCATCCCACAATAAAGGTGGAAAACACCCATTTGACATCAAGAGGAGCCTCCCCTTCAATTGCAGAGCGTCGAGGGAGTCATCCTCCACCTAGGATGTTGCTGCCCTCCATTGAAGAAGCCTGCAAGGTTCAGAGGAAAATAGTTCGATCATCGTCATTTTCTTTACCCGATTTAGACGATGATCAGTTGGAGATATCTGGGTACAGACAATCCAAAGATAAAAACAGTAGTAAAGATATGAATTTGGATATTGATAGATTTGGGGCTTGCACTGAATTAGAATGCAAATTTGAGGAAGGAAAAACACTGGTCTTTTACCAGTGGCCTTCAATGAGTAAAGCGACGATCAATCAACTTAGAAGTCTCGATTCTAGATCAGTGTATATGTCGTTCGATCCAGATCTAAATTTGGATTCAAACGGCGGTAACAAACTATTTATCTGGTTGGGGCGTGAAGTTTTGCATGAGAATGATGACAGTCAACTGGTGAATGACTACAGCGGTTGTCTCCACTGGGAGATGATCGGACATATTTTCATTAATAACAAGGGAATTCCTACAGATACCCAAATACAGATAATAAGAGAAGGGGAGGAGCCCGAGGAGTTCCTTGCACTTCTAAGCCGTTCATTACCTCAACAAGCGGAAGATGTTTGA 2814 43.03 MFNQSKQPEVEVGRPSWPPTRFRHVYDGQKENQKSRFGFLFSRFQNSATALFKHPSIQIRGFDSSRISFKWIRVKEVLYTFEMDEEKRGGGLAGCTRKAFFRSASWTDRSPSKPHHNRSLVPNSNKARSCLPPLQPLSISRRNVEEWPRAGSDDLGVWPNPETPRELVNKSSQSSECEQPVREFQFKKDKLAFFDKECSKILEHVYLGSDSVAKNRQVLRQNGITHVLNCVGFVCPEYFKGEFVYKTLWLQDSPSEDITSILYNVFDYFEDVHEQGGRVFVHCCQGVSRSTSLVIAYLMWKEGRSFHDAFQYVKAARGVANPNLGFACQLLQCQKRVHAVPASPNSILRMYRMAPHSSHDPLHLVPKLLNTPSVQGLDSRGAFVVHVPSAIYVWKGETCGSVMLNTANAAASQVIRYEKAKGPIHSIKEGEEPFEFWDALMIGQNLTDSSEEGKVQRLGNLSTTEDHISKITSVKVGERRVEEYNPDFEIFYRAISGGVVPPLDRFNTESENYLPTRENGWDSTKRKFENETAKDIATSLSELDCDTRSPFDDDMAMTANIDEDAEVPVSSIDLASPPISPTAYLCGSPESFDCFPNSSLDQEIENSNEESSIPGDPLSLPIHPLGSPDSFSCFQGGTSPKVGTKSPSLSPSTSDNSSSFTFSPSSSNWSDLSYMSSRQPSPSDMDSLHPAVQNSSIIDNFCLHHKETHPIFVESFSSYHPTIKVENTHLTSRGASPSIAERRGSHPPPRMLLPSIEEACKVQRKIVRSSSFSLPDLDDDQLEISGYRQSKDKNSSKDMNLDIDRFGACTELECKFEEGKTLVFYQWPSMSKATINQLRSLDSRSVYMSFDPDLNLDSNGGNKLFIWLGREVLHENDDSQLVNDYSGCLHWEMIGHIFINNKGIPTDTQIQIIREGEEPEEFLALLSRSLPQQAEDV 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35267918 35272414 - ClG42_05g0279000.10 Clacu05g2790 250537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2790 937 PANTHER MKPA PROTEIN 90 926 - -
Clacu05g2790 937 Pfam Dual specificity phosphatase, catalytic domain 205 335 IPR000340 GO:0016311(InterPro)
Clacu05g2790 937 CDD DSP 198 332 - -
Clacu05g2790 937 MobiDBLite consensus disorder prediction 596 621 - -
Clacu05g2790 937 Gene3D Protein tyrosine phosphatase superfamily 166 339 IPR029021 -
Clacu05g2790 937 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 256 317 IPR000387 GO:0016311(InterPro)
Clacu05g2790 937 MobiDBLite consensus disorder prediction 633 690 - -
Clacu05g2790 937 MobiDBLite consensus disorder prediction 106 125 - -
Clacu05g2790 937 MobiDBLite consensus disorder prediction 152 172 - -
Clacu05g2790 937 ProSitePatterns Tyrosine specific protein phosphatases active site. 281 291 IPR016130 GO:0016311(InterPro)
Clacu05g2790 937 ProSiteProfiles Dual specificity protein phosphatase domain profile. 197 339 IPR020422 GO:0006470(InterPro)
Clacu05g2790 937 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 191 338 IPR029021 -
Clacu05g2790 937 SMART dsp_5 197 336 IPR020422 GO:0006470(InterPro)
Clacu05g2790 937 MobiDBLite consensus disorder prediction 596 614 - -
Clacu05g2790 937 Gene3D Severin 348 447 IPR029006 -
Clacu05g2790 937 SUPERFAMILY Actin depolymerizing proteins 343 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2790 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2790 Clacu-Chr5:35267918 Clacu07g0292 Clacu-Chr7:3252292 1.40E-153 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007047 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37