Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g2800 | ATGGTTAGCCTTGATCAGATTATACATAGCATCGTTATCATGTGGCTTCCTCTAACAATGGTGCTATTATCTTCTCTACTGTTTCTTAAAACAAAGATGAAATTTGGAAGACACAATAACAAGAATGTTATTGTTCCTCCTCCAAGTCCACCAAAGCTTCCTTTCTTAGGTCATTTACACCTCATTACCTCTCTCCCCCATCGCTCTTTTTTTAACCTTTCAAAAAAATATGGCCCCGTCATCCTCCTCAAACTCGTCTCCATCCCGACCGTTGTAGTCTCCTCCGCCGATGCTGCAAAAGAGGTGCTAAAACTTCACGACCTTGCTTCTTGCAGCCGACCTCAATCCGCCGCTGGAGCAAGATTTTCATACAATTATCTAGACATTGGGTTAGCGCCATATGGTGACCATTGGAGGGAAGTTAGAAAAATTTGTGTGCTTGAGCTGTTCAGTGCTAGAAGAGTGCAATCATTTCAAATGATAAGAGAAGAAGAGATTGGTGTGCTGTTGAACTCCATTTCTCAATCTTCATCTTTTGCCACTCCAATTGATTTGAGTGAGAAATTGTACTCTCTCACTGCAAATATGATTACCCGAATTGCTTTTGGGAAGTGTTTTAGAGGAAGTGAGTTAGATAATGAGAATTTTCAAAAGGTTATCCGAAGAGCAGTTGCAGCAATAGGAAGCTTTGCAGCCATTGACTTCTTTCCTAAAGTGGGTTGGATTATTGATCGAATTAGTGGTGTTCATAGGAGATTGGAGAAGAGTTTTGCTGAGTTGGATGCTTTTCTTCAACATGTAGTTGATGATCGCATTAAATTTAGGGAGATTTCTCATAATTATGATGATAATCAAGAAAATATTGTTGATGTTTTGTTGAAAATGGAGAAGGATGGCTCTGAAGTTGATGCAGTGAAACTCACTAGAGATTGCATCAAAGCACTTGTCATGGATATATTTATAGCTGGAGTGGAAACAGGAGCAAACACACTTGTTTGGGCAATGACAGAGTTGGTAAAAAATCCAAAAGTGATGAAAAAGCTACAAGGTGAGATCAGAAGTTGCGTAAGAAAAAGTAAAGTAGTAAAAGAGAGGGACCTCGAAAATCTTGAATACCTAAAAGCCGTAGTGAAAGAAGTTCTAAGGTTGCATGCACCCGCCCCACTTCTGCTTCCAAGAGAAACCATGTCCCATTTTAAGCTAAATGGTTATGATATTAATCCAAAAACTCGTGTTCATGTCAACGTGTGGGCGATCGGACGAGACCCAAAATTATGGACTAACCCAGAAGCATTCTTGCCTGAGAGATTTATAGGGAGTGATATTGATTACAAAGGGCAGAATTTTGAGTTATTGCCATTTGGATCTGGTCGAAGAATTTGTCCTGGGATGAACATGGCAACCATTACAGTGGAGTTAGCATTGTCTAATATGTTATTGTGTTTTGATTGGAAATTACCAAATGGAATGAAAGAAGAAGATGTGGACATGGAAGAGGAACCTGGTATTGCAATTGCCAAGAAATCACCTCTTCACCTTCTTCCACTCCCTTACTTCAACTCCAAACAATAG | 1572 | 39.69 | MVSLDQIIHSIVIMWLPLTMVLLSSLLFLKTKMKFGRHNNKNVIVPPPSPPKLPFLGHLHLITSLPHRSFFNLSKKYGPVILLKLVSIPTVVVSSADAAKEVLKLHDLASCSRPQSAAGARFSYNYLDIGLAPYGDHWREVRKICVLELFSARRVQSFQMIREEEIGVLLNSISQSSSFATPIDLSEKLYSLTANMITRIAFGKCFRGSELDNENFQKVIRRAVAAIGSFAAIDFFPKVGWIIDRISGVHRRLEKSFAELDAFLQHVVDDRIKFREISHNYDDNQENIVDVLLKMEKDGSEVDAVKLTRDCIKALVMDIFIAGVETGANTLVWAMTELVKNPKVMKKLQGEIRSCVRKSKVVKERDLENLEYLKAVVKEVLRLHAPAPLLLPRETMSHFKLNGYDINPKTRVHVNVWAIGRDPKLWTNPEAFLPERFIGSDIDYKGQNFELLPFGSGRRICPGMNMATITVELALSNMLLCFDWKLPNGMKEEDVDMEEEPGIAIAKKSPLHLLPLPYFNSKQ | 523 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 35345916 | 35348534 | - | ClG42_05g0280000.10 | Clacu05g2800 | 250547 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g2800 | 523 | PANTHER | CYTOCHROME P450 71B11-RELATED | 25 | 515 | IPR050193 | - | |
| Clacu05g2800 | 523 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 454 | 463 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu05g2800 | 523 | FunFam | Cytochrome P450 83B1 | 33 | 514 | - | - | |
| Clacu05g2800 | 523 | CDD | CYP71-like | 76 | 511 | - | - | |
| Clacu05g2800 | 523 | SUPERFAMILY | Cytochrome P450 | 47 | 516 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | Gene3D | Cytochrome P450 | 32 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | E-class P450 group I signature | 98 | 119 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | E-class P450 group I signature | 331 | 357 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | E-class P450 group I signature | 74 | 93 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | E-class P450 group I signature | 311 | 328 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | E-class P450 group I signature | 451 | 461 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | E-class P450 group I signature | 374 | 392 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | E-class P450 group I signature | 192 | 210 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | E-class P450 group I signature | 415 | 439 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | E-class P450 group I signature | 461 | 484 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | Pfam | Cytochrome P450 | 47 | 509 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | P450 superfamily signature | 322 | 339 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | P450 superfamily signature | 461 | 472 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | P450 superfamily signature | 452 | 461 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu05g2800 | 523 | PRINTS | P450 superfamily signature | 375 | 386 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu05g2794 | Clacu-Chr5:35287385 | Clacu05g2800 | Clacu-Chr5:35345916 | 2.20E-201 | dispersed | |
| Clacu05g2798 | Clacu-Chr5:35318748 | Clacu05g2800 | Clacu-Chr5:35345916 | 5.00E-198 | dispersed | |
| Clacu05g2800 | Clacu-Chr5:35345916 | Clacu05g2802 | Clacu-Chr5:35355450 | 1.10E-283 | dispersed | |
| Clacu05g2799 | Clacu-Chr5:35330899 | Clacu05g2800 | Clacu-Chr5:35345916 | 9.50E-205 | tandem | |
| Clacu05g2800 | Clacu-Chr5:35345916 | Clacu05g2801 | Clacu-Chr5:35353012 | 8.80E-137 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g2800 | - | - | - | 0.0 |