Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2821 ATGGGGTTTCCTCTTTTTTGGGTTTTGATTCTTCTTCTCGTCGTTTCTTCTGTCTATTGTCAGGTTAAAGAGTTCATCAGTATAGATTGTGGAGGGACAAAGAATTTCACCGACCCAGTTACAGGGCTGGCATGGATTTCCGACGCCGGAATTATGAACGCCGGTGGGTCATCACCGGTGGAAAACCCAAATGGAAACTTGATGCAGTACCAAACACGGCGGGACTTTCCAATCGATGATAAGAAGTACTGCTACACTTTGAAAACAGAGGAAAGAAGAAGGTATTTGGTCCGAGCAACTTTTCAATATGGAAGTTTGAAGGATGAAGAAACTTACCCTAAATTTCAGCTCTATTTGGATGCAACTAAGTGGTCAACTGTAACCATTTTTGATGCTTCAAGAGTTTATGTGAAGGAGATGATCGTCAGAGCACCTTCAAATTCATTTGATGTTTGCATATGCTGTGCAACTACTGGTTCTCCATTCATATCCACTCTTGAGCTTCGCCCTTTTAATCTTTCAATGTATGCAACAGATTTTGAAGATAATTTCTTCTTGGAAGTTGCTGCTAGAGTGAATTTTGGTGCTTTAACCAAGGATGCGATAAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGACCTTGAGAAGAGGCAGAATTATCTTGTGGGGGTGGCTCCAGGGACAGAAAGAATCAGCACTTTGAACAATATTAATGTAATGACAAGAGAATATCCACCTGTTAAAGTGATGCAGACTGCAGTTCTTGGCTCAAAAGGAGTGCTGAGCTACAGGTTGAATTTGGATGATTTTCCTGCCAATGCAAGAGCTTATGCATATTTTGCTGAGATTGAAGATTTGGGTTGGAACGAGACACGGAAGTTCAAATTGGAGGAACCTAACATTCCGGATTCGAGTAATGCAGTGGTGAATATTGCAGAGAATGCTAATGGGACCTATACTCTTTATGAACCAAGTTATATGAATGTGACTCTGAGTTTCGTGCTTTCATTCTCATTCGTCAAGACTCGAGATTCGACTCGTGGACCACTTTTGAATGCATTGGAAATTAGTAGATATGTTGAGATTGCTGCCAAGACTGATAGGCGAGATGAGTCTGTTGTGAATGTCTTCCGTAACGTGTCAGCAGAGAATGTTTGGTCAAATGAAGGTGATCCTTGTGTTCCAACAAGCTGGGAATGGGTGACTTGTTCTGCCACGCAACCACCGAGAATAACTAAGATAGAGCTTTCCAGAAAGAATGTCAAGGGAGAAATTCCACCAGAGATCAATACTATGGATGGGTTAATGGAATTGTGGTTGGATGGAAATTCCCTTGCTGGACCACTGCCTGACATGAGTAATCTAATAAACTTGAAGATTTTACATCTAGAGAATAACAAATTGACAGGGACATTGCCTTCTTACCTGGGTAGTTTGCCCAACTTACAGGAATTATATATTCAAAACAATACGTTTTCGGGTGAAATACCTTCAGAATTATTGGCAAAGAAACTCATCTTTAAGTACGACGGTAACGTGGGGCTGCATAAAAGTGAACGATACAAGATGCATTCTAAGCTTATAGTAGGAGTTTCATTGGGAGTGCTTGTGCTTTTGATTATTCTACTTTTAGGAAGTTTGCTGTTACTCCGCAAGCTTCGAAGAAGAACAGCACCTTACCAGAAAAAAGGCGGTTCTCTGCAAATCAGCACCAAGCGCTCTTCTGGCTACTCGATTGGCAAGGGGGATGAAGGCATGGCCTACTATTTATCTCTCTCCGAGCTGGAAGAAGCGACAAATAACTTCTCTAAGAAAATTGGTAAAGGCAGCTTTGGATCAGTCTTTTATGGGAAGATGATTGACGGCAAAGAAGTGGCAGTTAAGATCATGGCCGAGTCATCTACACATGGGAATCAGCAATTTATGACTGAGGTTGCCCTCTTATCAAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGGTACTGCGAAGAAGAACATCAACGGATCCTCGTTTACGAATATATGCATAATGGAACGTTGCGAGATCACTTATATGGTTCTACGACTCAAAAGCACTTGGATTGGCTGGCTCGGCTGCACATTGCAGAAGATGCAGCTAAAGGGCTTGAGTATTTGCACACGGGATGCAGCCCGAGTATCATTCATCGAGATGTAAAAACTAGCAACATACTCCTCGACATCAATATGAGGGCAAAGGTTTCCGACTTTGGACTCTCGAGGCAAGCCGAGGAAGATTTGACCCATGTATCAAGCGTTGCTCGAGGAACCGTAGGCTACTTGGATCCTGAGTACTATGCTTGTCAACAACTTACCGAAAAGAGCGATGTCTATAGTTTTGGGGTTGTGCTGCTCGAACTGATCTCTGGGAAGAAACCAGTCTCACCAGAAGACTATGGCAATGAATTGAACATTGTTCACTGGGCAAGGTCCCTGGTCCATAAAGGGGATGTGACGAGCATTGTAGATCCATTTTTAGAAGGAAAAGTCAAAATAGAATCGGTGTGGAGAATCGCTGAAGTTGCCATACAGTGTGTGCAGCAGCATGGAGTTTCCAGGCCAAGGATGCAGGAAGTCATCTTGGCCATACAAGATGCAATCAAGATCGAACAAGGTACTGAAGGAAACCAAAAGCTATCTTCAGGCAGTTTAAAAGCACAATCGTCTCGAAAAACTTTGCTGACCACCTTTCTTGAAATCGAGAGCCCTGACGGTTCCCTCCTTCCCTCTGCAAGATAA 2769 42.8 MGFPLFWVLILLLVVSSVYCQVKEFISIDCGGTKNFTDPVTGLAWISDAGIMNAGGSSPVENPNGNLMQYQTRRDFPIDDKKYCYTLKTEERRRYLVRATFQYGSLKDEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIVRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDNFFLEVAARVNFGALTKDAIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGSKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPLLNALEISRYVEIAAKTDRRDESVVNVFRNVSAENVWSNEGDPCVPTSWEWVTCSATQPPRITKIELSRKNVKGEIPPEINTMDGLMELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSYLGSLPNLQELYIQNNTFSGEIPSELLAKKLIFKYDGNVGLHKSERYKMHSKLIVGVSLGVLVLLIILLLGSLLLLRKLRRRTAPYQKKGGSLQISTKRSSGYSIGKGDEGMAYYLSLSELEEATNNFSKKIGKGSFGSVFYGKMIDGKEVAVKIMAESSTHGNQQFMTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGSTTQKHLDWLARLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYACQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGNELNIVHWARSLVHKGDVTSIVDPFLEGKVKIESVWRIAEVAIQCVQQHGVSRPRMQEVILAIQDAIKIEQGTEGNQKLSSGSLKAQSSRKTLLTTFLEIESPDGSLLPSAR 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35494863 35499551 - ClG42_05g0282100.10 Clacu05g2821 250568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2821 922 SUPERFAMILY L domain-like 389 503 - -
Clacu05g2821 922 PANTHER OS07G0107800 PROTEIN-RELATED 455 879 - -
Clacu05g2821 922 Pfam Malectin-like domain 28 360 IPR024788 -
Clacu05g2821 922 SMART serkin_6 603 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2821 922 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 679 886 - -
Clacu05g2821 922 Pfam Leucine Rich repeats (2 copies) 460 496 IPR025875 -
Clacu05g2821 922 ProSiteProfiles Protein kinase domain profile. 603 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2821 922 Gene3D Ribonuclease Inhibitor 373 511 IPR032675 -
Clacu05g2821 922 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 407 505 - -
Clacu05g2821 922 Gene3D Phosphorylase Kinase; domain 1 582 678 - -
Clacu05g2821 922 FunFam receptor-like serine/threonine-protein kinase NCRK 582 678 - -
Clacu05g2821 922 ProSitePatterns Protein kinases ATP-binding region signature. 609 631 IPR017441 GO:0005524(InterPro)
Clacu05g2821 922 Gene3D Transferase(Phosphotransferase) domain 1 679 896 - -
Clacu05g2821 922 SUPERFAMILY Protein kinase-like (PK-like) 587 870 IPR011009 -
Clacu05g2821 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 724 736 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2821 922 Pfam Protein tyrosine and serine/threonine kinase 605 870 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1647 Clacu-Chr5:24519614 Clacu05g2821 Clacu-Chr5:35494863 1.30E-66 dispersed
Clacu05g2821 Clacu-Chr5:35494863 Clacu10g2030 Clacu-Chr10:33772783 1.50E-216 dispersed
Clacu06g0589 Clacu-Chr6:6731008 Clacu05g2821 Clacu-Chr5:35494863 2.50E-43 dispersed
Clacu07g0423 Clacu-Chr7:4918683 Clacu05g2821 Clacu-Chr5:35494863 7.10E-61 dispersed
Clacu11g0646 Clacu-Chr11:6185875 Clacu05g2821 Clacu-Chr5:35494863 7.70E-59 dispersed
Clacu05g2821 Clacu-Chr5:35494863 Clacu09g0229 Clacu-Chr9:2110013 2.90E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73608 PF12819 Malectin_like 3.70E-86 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2821 - - - 0.0