Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2831 ATGGACATTCCTTCTATAATCGTAAATGCTTTGTTTATTTTTGCATTCTTGATGTGGGTTTTGCTTAACTCGTGTAAACGAGAGGTAGAGAGTGATTCCCTTCAGTCGAGAGACAGAGCATTTCGAGAGTTTAAATCGGTAATCAGCATTACTATATTTTGTAATGCTGTTATTCCATTTTGGAATTCCGGGTTTGTTGCGTATCAGTACTGGAATCATGGAATCGTTTGTGGGGAATCAGCAATTTCTGCTTTAACGTGGATTTTGGCTGCTGCGATTGCTTTTTACTGGAGAAACGGAATGTATTATCAAGGCAAAAAATGGCCGTTGATTCTAATTGTTTGGTGGGTTTTCTCGTGTGTTTATGGGTTATGTTCTTCGATTATTTACCTGCTGACCCACTTGAAATCTATGGAGTTTCCTCATTTTCTTCCAAAAGCTACTATTGTAGATTTTGCTTCATTCACTTTGTCTTTGATTATCTGTTGTACGGCACTGACTGTTAACTATTCCAAGAAACATAATGATCTTGAGAAGTCATTGCTCCAAAAAGACAATGATTGTTCTTCCGAAAATGATGGTGGTTTCATCAGTCCTGGATTATGGAGTCGAATTACATTCCAATGGCTGAATCCTCTCTTCAAAAGGGGGAGGAATCAGAAACTTGAATTAGCTCATGTTCCTTGTGTACCTCAACCTGAAACAGCTGAATATGCTTCTTCATTGCTAGAAGAATCACTTCAGAGAAAGAAAGTTGAATCTTCTTCCTTGCCCAAAGCTATAGTTCTAGCGACGTGGAAATTTCTGGTCTTAACTGCAATTTTTGCAGGATTCAACACATTCGCATCCTTTATGGGGCCTTTCCTAATCACCAACTTTGTGAATTATCTGTTGGGAAAAAGTGATGACTCAAGCAACCGTGATGGGTTGATTCTTGCATTCTTCTTCTTCTTTGCTAAGACATTGGAGTCTCTTACTCAAAGACAATGGTATTTTGGCACTCACCGTGTCGGTATACAGGTAAGGGCAGCTCTTACAGTGATGATCTACAAGAAATCTATATCTATTAATGCTGCTGGTCCAGGTAATGGTAAAATCATAAATCTAATAAATGTGGATGTTGAAAGAATTGGAGACTTCTCGTGGTATATTCACAAGATTTGGTTGCTTCCTGTTCAAATAGCTCTAGCCCTTATCATCCTTTACAGGAATCTTGGAGCTGCTCCTTCCATTACTGCTCTTTTAGCCACAATATTTATAATGGTGAGCAACACACCTTTGGCCAATGTTCAAGAAAGTCTACACTCAAAGATAATGGATGCAAAGGACTCTAGAATCAAATTGACATCAGAGACTCTAAAGAACGTGAGAGTCTTGAAACTGCATTCTTGGGAACAGACATTTTTGAAGAAGGTCTTGAAACTTCGAGAAGTTGAAAGAAGCTGGTTGAAGAGATACCTCTATACGTGCTCCGTTATAGCATTTCTCTTTTGGGTTTCACCAACTTTAGTTTCAGTCGTTACTTTTGGCGCCTGTGTTATGATGAAAATCCCTCTAACAGCAGGCACAGTTCTATCAGCCATTGCTACTTTTCGTATCCTACAAGAGCCAATTTATAACCTACCAGAGCTAATTTCCATGATCGCTCAAACAAAAGTTTCCCTTGACCGTATACAAGAGTTCATTCGAGAAGAAGACCAAAGGAAGCAGATTTATTATCCTCCTTCGAATGCATCAGACGTCGCGATTGAAATCGAGGTCGGGGAGTATTCGTGGGAAGCTAGTGATCTAAATTTTAAGAAACCAACTATAAAAGTTGCAGAGAAGATGCAAATACCAAAGGGTTACAAGGTTGCAGTCTGTGGATCAGTTGGTTCAGGAAAATCAAGCCTACTTTGTAGTATACTGGGTGAGATCCCACAGGTCTCAGGAACACAAATGAAAGTACATGGAACTAAAGCTTATGTTCCCCAAAGTGCTTGGATCCAATCAGGCACTGTAAGAGAGAATGTGCTGTTTGGGAAAGAGATTGACAAACATTTTTATGAGGATGTGTTAGAAGCCTGTGCTTTGAATCAGGATATCAAGTTGTGGCTGGATGGAGATTGTACTTTGTTGGGAGAGAGGGGGTTGAACTTAAGTGGAGGGCAAAAGCAGAGGATTCAATTGGCAAGGGCAGTCTATAGTGATGCAGATGTTTATTTCCTGGACGATCCTTTTAGTGCTGTGGACGCATGTACCGGAACACATTTGTTCAAGAGATGTCTTTTGCAACTTCTGTCTAGTAAAACTGTGGTATATGCTACTCATCACTTGGAATTCATCGAAGCTGCAGATCTTGTTCTGGTGATGAAAAATGGTCATATTGTTCAATCAGGAAAGTATGCAGAATTAATGTCAGACTCAAACGGTGAACTTTCTAGGCACATTGCAGCTCATAGAAGATCATTGAATGGAGTTAAGCCATTCAAAGAAGATAAACCCCATCATAAAAGACCATGTAAGACACATCAGATAGAAGCTCTAGATGAAAATTTTTCACTATCCCTTGGGAATGTTGGCCACTCTGTAAGAACTCAAGAAGAGGAAACTCAAACCGGTCGTGTAAAGTGGAGTGTCTACTCAACCTTCATCACATCTGCTTATAAAGGAGCTCTTGTTCCTGTAATCCTTTTATGTCAAGTATTGTTTCAAATCCTTCAGATGGGCAGTAATTACTGGATTTCTTGGGCAACAGAAGTAGAAGGCAAGGTCAGCAGAGAGCAGTTGTTAGGGATCTTCGTTTTGATGTCCGGTGGGAGCTCCATCTTTATATTAGGCCGGGCCGTTTTGATGGCAACCATTGCTATTGAGACTGCACAAAGAATGTTTCTTGGAATGGTGACATCAATATTTGCAGCACCTATTTCATTTTTTGATGCCAAACCTTCAAGCCAAATCCTTAACAGGTCTTCTACTGATCAAGGCACCTTGGATACAGATATCCCTTATAGATTAGGAGGATTGGCTTTTGCACTCATTCAGCTGTTGAGTATCATCATCCTGATGTCCAAGGTTGCATGGCAACGGCATCACATCAATGTGACGTGCTTTGATCAGGGATATTACATCAGTACTGCCAGAGAACTAGCTAGAATGGTCGGGATTCGGAAGGCTCCAATTCTTCATCACTTTTCTGAAACAGTCGTAGGTGCAACAATTATCCGTTGTTTCAATCAAGAGGACCGTTTCTTGACAAAAATACTGAAGCTGGTTGATGATTATTCTCGTGTGGTTTTTCATAACTCAACTTCAATGGAATGGTTGTGCCTGAGGATCAATTTTCTTTTCGATGTTGTCTTCTTTCTCGCCCTTACCATCTTAGTGACCCTTCCTAGAACGGCAATTGATCCAAGCTTAGCAGGATTAGCAGCTACATATGGTTTGAACATGAATGTGCTTCAGGCTTGGGTAATATGGAATTTATGTAATGTGGAGAACAAAATGATATCTGTTGAGAGGATTCTTCAGTTTACTAACATTGCTTCTGAGGCGCCACCGGTTATCGAAGATTGTAGGCCAATGCCAGAATGGCCAAAGGAGGGAAAGATAGAACTTGAGAACCTTCATGTCCAATACCGTCCTAATCTTCCAGTGGTTCTCAAAGGGATCACTTGTACCTTCCCAAAAAAGAAGAAAATTGGAGTTGTTGGCAGGACAGGAAGTGGAAAATCCACCTTAATCCAAGCACTTTTTAGAGTGGTAGAGCCTTCTGCAGGAAGGATTCTCATTGATGGAGTTGACATTTGCAAAATTGGTCTACATGATCTGAGGTCCAAGTTGGGTATTATTCCACAAGACCCAACATTGTTCCAAGGAACCATGAGAACTAACCTAGACCCTTTGCAGCAACATACTGATCCAGAAATATGGGAGGTCCTTCACAAGTGTCGTTTTGCCGAGATCATCCGAACGGACCACGCGGTTCTTGAAGCACCAGTGGCTGAAGATGGAGAGAATTGGAGTGTGGGACAGCGGCAACTTGTTTGTCTGGCCAGAGTGCTCCTCAAAAAACGTAGGATTCTTGTGTTGGATGAGGCAACAGCTTCCATTGATACTGCAACAGAAAATATAATTCAGGAAACAATAAGAGAGGAGACTAATGGTTGTACCGTCATTACTGTGGCTCATCGAATACCAACAATTATCGATAACGATTTGGTTTTGGTTCTTGATGAAGGCAAGGTAATCGAGTACGATTCACCATCTCGATTACTCGAGAACAGTTCTTCTATGTTTTCAAAGTTGGTGACGGAATTCTTGAGTAGATCATCCAATAGTCACTCACAATCTATGGGGACTTTTGTCAATACCGACCCAAACTGA 4365 40.8 MDIPSIIVNALFIFAFLMWVLLNSCKREVESDSLQSRDRAFREFKSVISITIFCNAVIPFWNSGFVAYQYWNHGIVCGESAISALTWILAAAIAFYWRNGMYYQGKKWPLILIVWWVFSCVYGLCSSIIYLLTHLKSMEFPHFLPKATIVDFASFTLSLIICCTALTVNYSKKHNDLEKSLLQKDNDCSSENDGGFISPGLWSRITFQWLNPLFKRGRNQKLELAHVPCVPQPETAEYASSLLEESLQRKKVESSSLPKAIVLATWKFLVLTAIFAGFNTFASFMGPFLITNFVNYLLGKSDDSSNRDGLILAFFFFFAKTLESLTQRQWYFGTHRVGIQVRAALTVMIYKKSISINAAGPGNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALIILYRNLGAAPSITALLATIFIMVSNTPLANVQESLHSKIMDAKDSRIKLTSETLKNVRVLKLHSWEQTFLKKVLKLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVVTFGACVMMKIPLTAGTVLSAIATFRILQEPIYNLPELISMIAQTKVSLDRIQEFIREEDQRKQIYYPPSNASDVAIEIEVGEYSWEASDLNFKKPTIKVAEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQVSGTQMKVHGTKAYVPQSAWIQSGTVRENVLFGKEIDKHFYEDVLEACALNQDIKLWLDGDCTLLGERGLNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSSKTVVYATHHLEFIEAADLVLVMKNGHIVQSGKYAELMSDSNGELSRHIAAHRRSLNGVKPFKEDKPHHKRPCKTHQIEALDENFSLSLGNVGHSVRTQEEETQTGRVKWSVYSTFITSAYKGALVPVILLCQVLFQILQMGSNYWISWATEVEGKVSREQLLGIFVLMSGGSSIFILGRAVLMATIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSSTDQGTLDTDIPYRLGGLAFALIQLLSIIILMSKVAWQRHHINVTCFDQGYYISTARELARMVGIRKAPILHHFSETVVGATIIRCFNQEDRFLTKILKLVDDYSRVVFHNSTSMEWLCLRINFLFDVVFFLALTILVTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERILQFTNIASEAPPVIEDCRPMPEWPKEGKIELENLHVQYRPNLPVVLKGITCTFPKKKKIGVVGRTGSGKSTLIQALFRVVEPSAGRILIDGVDICKIGLHDLRSKLGIIPQDPTLFQGTMRTNLDPLQQHTDPEIWEVLHKCRFAEIIRTDHAVLEAPVAEDGENWSVGQRQLVCLARVLLKKRRILVLDEATASIDTATENIIQETIREETNGCTVITVAHRIPTIIDNDLVLVLDEGKVIEYDSPSRLLENSSSMFSKLVTEFLSRSSNSHSQSMGTFVNTDPN 1454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35560298 35566262 + ClG42_05g0283100.10 Clacu05g2831 250578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2831 1454 Gene3D - 565 823 IPR027417 -
Clacu05g2831 1454 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 198 1430 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Clacu05g2831 1454 SMART AAA_5 614 788 IPR003593 GO:0016887(InterPro)
Clacu05g2831 1454 SMART AAA_5 1223 1414 IPR003593 GO:0016887(InterPro)
Clacu05g2831 1454 CDD ABCC_MRP_domain1 583 787 - -
Clacu05g2831 1454 SUPERFAMILY ABC transporter transmembrane region 887 1179 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Clacu05g2831 1454 CDD ABC_6TM_ABCC_D1 271 558 IPR044746 GO:0140359(InterPro)
Clacu05g2831 1454 Pfam ABC transporter 610 740 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu05g2831 1454 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 270 550 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Clacu05g2831 1454 FunFam ABC transporter C family member 10 253 566 - -
Clacu05g2831 1454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 802 IPR027417 -
Clacu05g2831 1454 FunFam ABC transporter C family member 3 1180 1432 - -
Clacu05g2831 1454 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1197 1431 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu05g2831 1454 FunFam ABC transporter C family member 5 852 1178 - -
Clacu05g2831 1454 Pfam ABC transporter 1214 1362 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu05g2831 1454 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 585 811 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu05g2831 1454 FunFam ABC transporter C family member 5 570 821 - -
Clacu05g2831 1454 Gene3D ABC transporter type 1, transmembrane domain 853 1178 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Clacu05g2831 1454 Gene3D ABC transporter type 1, transmembrane domain 244 564 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Clacu05g2831 1454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1188 1426 IPR027417 -
Clacu05g2831 1454 Gene3D - 1181 1433 IPR027417 -
Clacu05g2831 1454 CDD ABC_6TM_ABCC_D2 887 1172 IPR044726 GO:0140359(InterPro)
Clacu05g2831 1454 ProSitePatterns ABC transporters family signature. 713 727 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu05g2831 1454 CDD ABCC_MRP_domain2 1195 1415 - -
Clacu05g2831 1454 Pfam ABC transporter transmembrane region 270 537 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Clacu05g2831 1454 Pfam ABC transporter transmembrane region 890 1124 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Clacu05g2831 1454 SUPERFAMILY ABC transporter transmembrane region 265 566 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Clacu05g2831 1454 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 889 1160 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2831 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2831 Clacu-Chr5:35560298 Clacu09g2129 Clacu-Chr9:36083830 0.00E+00 dispersed
Clacu05g2831 Clacu-Chr5:35560298 Clacu10g1079 Clacu-Chr10:22995232 3.60E-265 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006115 0 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 2 3 1 38