Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2841 ATGTGGTTACCAAGATACAGCTTAGAAAGAAAAGAGAGATTGAATGTGAATGGATTTGTGGCAGTGGCAATTGATAAAGACAAAGGAAGCCAAGGAGCTCTCAAATGGGCGATTGATCATTTGCTTCAAAGAGGACACACTATTTTCCTCATCCATGTCAAACTCAGATCTCCTTCTAATTCTTCCCAAAAGATGAGTTTGAAATCTGACTCTGAATCCAGTGTCAAAGAATTATTCCTTCCTTTTCGTTGCTTTTGTACTCGTAAGGATATACAATGCAAAGATGTTGTGTTGGAAGATACAGATGTAGCAAAGGCCATAATTGAGTATGCTGCAAATACAGCCATAGAGAACATTGTCGTGGGTGCTTCAGCAAAATCTGGCTTCTTAAGATTCAAGGCAACTGATGTTCCTGGCAGTGTAGTGAAAGGAGCACCAGATTTTTGTAATGTGTTTGTCATTTCTAAAGGAAAAATCCAATCGATGCGTTCGGCATCTCGTCCTGCTCCACCGGTAACTGCTCTACGAGGTCAATTAGCGCAACAGTCCAGCGCAAAATCAGATATGCCTGACTTCTCTGTCTCTCACTCTGCAAGTGCAAGAGCGTCTTTGGATAAGCCACCACTTGATCTGCCTAGTAAATCACAAGACGAGGCCGATTTCATGAGGTCCCCATTCACAAGGAAAGGATATAACTACAAAGCATCATATGGAGATTTGTCTATGCAAGATTCAGATATATCTTACGTTAGCTCGGGAAGACCGAGCATCGATCGTATATTTCCTTCACTTTATGACAGTCAAGATATGGGAGGAAGAGCCACACCACCACAGATTTCAAGCAGTACAGATCTTGACTTGACTCGCAGCTTTGAGTCTCTGCAGTTGGGACGGATGTCGGTGGATATGAACTTTCCGTCTGAGTTCTCTTCGATCTCACAAGATAGTGACAGAATGTCTATCTCATCACAGTCTATGGAAGATGTAGAGGCCGAGATGCGGAGGCTGAAGCTAGAACTCAAGCAAACCATGGAAATGTACAGTACAGCCTGCAAGGAAGCTCTTACAGCAAAACAAAAGGCGATCGAGCTACAACGCTGGAAACTAGAAGAAGAACAAAGATTAGAAGAGGCAAGATTGGCGGGGGAAGCTGCATTGGCACTAGCCGAACAAGAGAAGGCGAAGTCGAAAGCAGCAATTGAGGCAGCTGAAGCAGCTAGAAGAATTGCAGAATTGGAAGCACAGAAAAGAATGAAGGCTGAAATGAAAGCACTCAAAGAAGCTGAAGAGAAGAAAAAGGCATTTGATGCATTGGCACAAAATGATATCAGGTATAGAAAGTATACGATCGAGGAGATCGAAGAGGCAACAGAGTTCTTTTCCGAATCTCGTAGGATCGGAGAAGGAGGATATGGTCCTGTTTACAAGTGTGATCTTGATCATACTCCTGTTGCCATTAAGGTTCTACGTCCCGATGCGACTCAAGGACGATCTCAGTTTAAACAAGAGGTAGAAGTACTCAGCTGTATACGTCATCCAAACATGGTTCTCCTCCTTGGAGCTTGCCCCGAGTACGGCTGCTTGGTCTATGAGTTCATGGCTAATGGGAGCTTAGAAGACCGACTTCTGCGACGAGGAAACACGCCTCCACTTTCATGGCAACTTAGGTTTAAAATTGCAGCTGAAATTGGAACAGCATTGTTGTTCTTGCACCAAACAAAGCCAGAGCCTCTTGTGCATCGCGATCTCAAACCAGCTAACATTCTGCTCGATCGTAACTTTGTTAGTAAGATCAGTGATGTTGGCTTGGCTAGGCTTGTACCGCCATCCATTGCCGATAGCGTAACACAATATCGAATGACATCAACTGCTGGAACATTTTGCTACATTGATCCAGAGTATCAACAAACAGGTATGCTTGGTGTGAAATCCGACATATACTCGCTAGGCATCATGTTTCTCCAACTTATAACTTCTAGGCCGCCAATGGGATTAACTCACCATGTCGAAAGAGCTATCGAGAAGGGAACGTTCGAAAATATTCTCGATCCAGCTGTCCCTGATTGGCCTATTGAAGAAGCTTTGTCTTTCGCCAAGTTGTCACTCAAGTGCGCCGAGTTAAGACGTAAAGATAGGCCAGATCTTGGGAAGGTCATCCTTCCAGAGCTTAACAGGTTGAGAATTATTGCAGAAGAAACAATGCATCCAACACTGATGGGAGATATAAGCCCTTCTCGCAGCAGCAGTCAAGTTTCTTTTCAGTTGGGAGCAATGGCTTCATCTCCGCAATCATACAACAGCTCGAGAAATCCATCGGCTAATTTTTGA 2328 44.03 MWLPRYSLERKERLNVNGFVAVAIDKDKGSQGALKWAIDHLLQRGHTIFLIHVKLRSPSNSSQKMSLKSDSESSVKELFLPFRCFCTRKDIQCKDVVLEDTDVAKAIIEYAANTAIENIVVGASAKSGFLRFKATDVPGSVVKGAPDFCNVFVISKGKIQSMRSASRPAPPVTALRGQLAQQSSAKSDMPDFSVSHSASARASLDKPPLDLPSKSQDEADFMRSPFTRKGYNYKASYGDLSMQDSDISYVSSGRPSIDRIFPSLYDSQDMGGRATPPQISSSTDLDLTRSFESLQLGRMSVDMNFPSEFSSISQDSDRMSISSQSMEDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAIELQRWKLEEEQRLEEARLAGEAALALAEQEKAKSKAAIEAAEAARRIAELEAQKRMKAEMKALKEAEEKKKAFDALAQNDIRYRKYTIEEIEEATEFFSESRRIGEGGYGPVYKCDLDHTPVAIKVLRPDATQGRSQFKQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLEDRLLRRGNTPPLSWQLRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSIADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITSRPPMGLTHHVERAIEKGTFENILDPAVPDWPIEEALSFAKLSLKCAELRRKDRPDLGKVILPELNRLRIIAEETMHPTLMGDISPSRSSSQVSFQLGAMASSPQSYNSSRNPSANF 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35647434 35651982 + ClG42_05g0284100.10 Clacu05g2841 250588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2841 775 SUPERFAMILY Protein kinase-like (PK-like) 443 718 IPR011009 -
Clacu05g2841 775 Gene3D Transferase(Phosphotransferase) domain 1 533 736 - -
Clacu05g2841 775 FunFam U-box domain-containing protein 51 533 733 - -
Clacu05g2841 775 Coils Coil 352 372 - -
Clacu05g2841 775 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 432 532 - -
Clacu05g2841 775 ProSiteProfiles Protein kinase domain profile. 460 738 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2841 775 SMART serkin_6 460 729 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2841 775 Pfam Universal stress protein family 20 146 IPR006016 -
Clacu05g2841 775 Pfam Protein kinase domain 461 714 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2841 775 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 154 - -
Clacu05g2841 775 CDD STK_N 20 157 - -
Clacu05g2841 775 MobiDBLite consensus disorder prediction 177 222 - -
Clacu05g2841 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2841 775 Coils Coil 319 346 - -
Clacu05g2841 775 PANTHER OS02G0152300 PROTEIN 20 745 IPR051348 -
Clacu05g2841 775 Gene3D Phosphorylase Kinase; domain 1 438 532 - -
Clacu05g2841 775 Gene3D HUPs 20 154 IPR014729 -
Clacu05g2841 775 Coils Coil 386 438 - -
Clacu05g2841 775 MobiDBLite consensus disorder prediction 177 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0470 Clacu-Chr2:4215971 Clacu05g2841 Clacu-Chr5:35647434 2.10E-242 dispersed
Clacu05g2841 Clacu-Chr5:35647434 Clacu08g1410 Clacu-Chr8:24185947 5.80E-294 dispersed
Clacu05g2841 Clacu-Chr5:35647434 Clacu08g1155 Clacu-Chr8:21603546 4.80E-208 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73610 PF00069 Pkinase 5.30E-39 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2841 - - - 0.0