Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2844 ATGGCGCCGGGATTGGGGTTTTTATGTCGGTGGGGTAAAGAGAAAGACTCTCAAAAGGGAACTCCGGTGGTTGTGACGATGGAGAAACCTAATTTCTCCGTCGTAGAGATCGACGGTCCCGACGCTGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCTAAACAGGTCACGTGGGTTCTTCTTCTGAAGGCCAATCGAGCCGTCGGTTGCATAACTTGGCTTGTAACTGTTCTCTGGGCATTGTTGGGAACAATCAAGAAGAGGCTGATCTACAGGCAAGGAGTCGCCATTGAAGGGGGGAAGTTGGGAAGAGGGAAGTTATTGTTTGGAGTTATTAGAGTTTTCTTAGTAGCTTCCATTGCGATTCTTGCTTTTGAAATGCTTGCTTATTTCAAAGGCTGGCATTATTTTCAGAATTCCAATCTGCATATTCCTCAAGCTTCTGAGTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTTTAGAGCAGAGTACATTGCACCCCTCATCCAAACACTCTCTAAATTTTGCATTGTTCTGTTCCTTATCCAATCTGTGGATCGTATGATCCTTTGTCTTGGTTGCCTGTGGATAAAGTACAAAAGAATTGAGCCCAAGATTGAAGGGGATCCCTTCAAGTTGGATGATGAGGAGGGAGCTGGGCACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGTGAGGTTTATGAGCAGTCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGGCCATTTACTAATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTTCTAATTAAGGCAGAGGTCGCTAAATGGAGCCAAAAGGGGGTAAACATAGTGTATCGCCATCGATTAGTAAGGACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGTTGTGATTATGTTAGAGACTATGAGTTTGTAGCAATTTTTGATGCTGACTTTCAACCTAATCCAGATTTTCTTAAATTGACCATTCCCCATTTCAAGGATAACCCGGAGCTAGGTTTGGTTCAGGCCAGATGGTCTTTTGTGAACCGGGATGAAAATTTGTTGACACGCCTTCAAAATATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGGGTGTTCCTTAATTTCTTTGGTTTCAATGGCACTGCTGGTGTTTGGAGGATTAAAGCCCTGGAGGAGTCTGGAGGGTGGCTTGAAAGAACCACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAACGACGTTAAGGTCCTTTGTGAGGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAGTCATAAGTTCTAAGATATCAACATGGAAGAAGGCAAATTTGATTCTGTTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACTTTGTTCTGCATAATTCTTCCTCTAACCATGTTTGTTCCAGAAGCCGAGCTTCCTGTATGGGTGATCTGTTATGTGCCTGTCTTCATGTCATTACTAAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATTGTCCCTTACCTTCTTTTTGAGAACACTATGTCTGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGTTAGGTAGTTCTTATGAGTGGATTGTGACCAAAAAGGCTGGCAGGTCCTCCGAATCCGACTTACTGGCTGCTGCTGAAAGGGACTCTAAGACAATGAATCAAGTGTCCATCTGTAGAGGTGCGTCAGAGAGTGAGATTTCTGAGTTGGCTCACTTAAAGGAACGCAAAGAAGTCGTCTCTGCGCCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTAGCACTCGCGTTTCTTTTACTGTTAGCCTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTTCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTGA 2088 43.39 MAPGLGFLCRWGKEKDSQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGKLLFGVIRVFLVASIAILAFEMLAYFKGWHYFQNSNLHIPQASELQGLLHSLYVAWLTFRAEYIAPLIQTLSKFCIVLFLIQSVDRMILCLGCLWIKYKRIEPKIEGDPFKLDDEEGAGHKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRGHLLIQVLDDSDDESIQLLIKAEVAKWSQKGVNIVYRHRLVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTIPHFKDNPELGLVQARWSFVNRDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAVISSKISTWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKTMNQVSICRGASESEISELAHLKERKEVVSAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35687717 35690520 + ClG42_05g0284400.10 Clacu05g2844 250591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2844 695 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 151 694 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Clacu05g2844 695 Pfam Glycosyl transferase family group 2 324 535 IPR001173 -
Clacu05g2844 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 531 IPR029044 -
Clacu05g2844 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 449 IPR029044 -
Clacu05g2844 695 FunFam probable xyloglucan glycosyltransferase 5 223 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2844 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2844 Clacu-Chr5:35687717 Clacu09g1919 Clacu-Chr9:34098473 2.50E-272 dispersed
Clacu05g2844 Clacu-Chr5:35687717 Clacu08g0960 Clacu-Chr8:19682349 5.10E-116 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g1814 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.7e-57 217.2
Clacu05g2844 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Clacu09g1919 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.3e-268 919.8
Clacu05g2856 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.2e-262 900.6
Clacu08g1835 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.7e-260 895.6
Clacu09g0840 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Clacu05g2844 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Clacu09g1919 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.3e-268 919.8
Clacu05g2856 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.2e-262 900.6
Clacu08g1835 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.7e-260 895.6
Clacu09g0840 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Clacu05g2844 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Clacu09g1919 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.3e-268 919.8
Clacu05g2856 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.2e-262 900.6
Clacu08g1835 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.7e-260 895.6
Clacu09g0840 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Clacu09g1814 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.7e-57 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38