Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2846 ATGGAACTGAAGAAAGGCAAATTCGTCAGGTTTTACTCCAATGAGAAGAAGAATCTTGAGCTTCCATGGGAGAAAAACGATGGGAAGAAGAGGAGCATTGAGTTCTCATTACCAGTTTTCAAAATGGGCAAGAAATTAGAGAATGAAAGTAAAATTATGAACTCGGATTCTTCAGGGAGGTCCAAGGGCTTTTTGGAGAGTAATGGGTTACAAGAAGAGAAGAACAAGAGGATTCTTAATCCAGAAAGTGAAAGGATTCTGAGATGGAATAGAGTTTTTCTCTTCTCTTGTTTGACAGCTCTTTTCGTTGACCCATTGTTCTTCTACCTTCCTTCAGTGATTCATCATAAGAGGTCATCTTGTATGACTACTGATTTCAATTTGGGAATTGTTGTGACTGTTTTTCGTACTTTTGCCGATGTTTTCTATCTGTTGCATATGATTTTGAAGTTCCGGATTGCTTATGTATCACCAACTTCAAGAGTTTTTGGTAAAGGTGAACTCGTTACTGATCCAAAGAAGATTGCCAAACGCTATTTGAAGTCAGATTTCTGTATAGATCTCATTGCTTCTCTGCCTCTTCCGCAGATTATGATATGGTTTATCATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTGTTAATTGTCCTGCTTCAGTATATTCCAAGATTTTACCTGATTTTCCCATTAAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCTGGGGCTGCATACAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTGCTATCTGTGGAGCGCCATGCCATGTGCTGGAAGTCCGCCTGCAGGAGCGAATTCAGTCCTATGAAATGCCGTCTTGACTATCTGGATTGTGGTACTTTAAATGATGTAGACCGCAGGATATGGGAAGTGAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAGATGTTGTTTTCAATTACGGGATATTTGCGAATGCGATCGCCAAAGATGTCGTCTCCTCCAGGTTCCTTCAGAAGTATTTCTATTGTTTATGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGGGTTTGTCGACAAGCATCTACATGGGAGAGACTTTATTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCACATTTGATCGGAAATATGCAGACCTATTTGCAATCCATCACTGTGAGACTGGAGGAATGGAGGGTCAAGCGTCGAGACACGGAGGAATGGATGAAACATCGACAGCTCCCTCAAGATTTACAAGAACGTGTGAGGAGATTTGTTCAATATAAGTGGCTTGCAACACGAGGAGTTGACGAAGAGTCAATCTTACAAGGCCTTCCAACAGATCTCCGTCGAGATATTCAGCGCCACTTGTGCCTCGACCTTGTTCGACGTGTTCCTTTTTTCGCACAAATGGATGATCAACTACTTGACGCAATTTGCGAGCGACTTGCTTCCTCTCTATGTACACAACGTACCTACATTGTTCGTGAAGGAGATCCTGTTACTGAGATGCTCTTTATCATCCGAGGGATGCTCGAGAGTTCCACAACGGATGGAGGACGGTCAGGTTTTTTCAATTCGATAACCTTAAGACCTGGCGATTTTTGTGGCGAAGAGCTTCTGGCTTGGGCATTGCTACCAAAATCATCAATCAGCTTGCCATCTTCTACTAGAACAGTTAAAGCAATCACTGAAGTGGAAGCCTTTGCTCTACGTGCTGAGGATCTCAAATTCGTCGCTAACCAGTTTCGACGTCTTCATAGCAAGAAGCTTCAGCACACATTCCGGTTTTACTCTTATCACTGGAGAACCTGGGCAGCCTGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGGCGAATCATAGCAAAGTCGCTCAGCTTGCAGGAGTCTTTCTCGATGACTCCTGAGAAGCCAGTGGCGGATGAAGCCGAACAAGAAGAGGAAGAGCATAATACTCCACGCTCCAATTACTCTCAAGCAAAGCAAAACCTTGGTGTCACCATATTGGCTTCAAGGTTTGCTGCAAACACACGTAGAGGAGCTCAAAAGCTTAAGGATGTCAACTTATCCAAGCTGCGAAAGCCTGATGAGCCGGACTTTTCTGAAGAACCAGACGATTAA 2184 43.09 MELKKGKFVRFYSNEKKNLELPWEKNDGKKRSIEFSLPVFKMGKKLENESKIMNSDSSGRSKGFLESNGLQEEKNKRILNPESERILRWNRVFLFSCLTALFVDPLFFYLPSVIHHKRSSCMTTDFNLGIVVTVFRTFADVFYLLHMILKFRIAYVSPTSRVFGKGELVTDPKKIAKRYLKSDFCIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKSACRSEFSPMKCRLDYLDCGTLNDVDRRIWEVNTTVFSQCSPDEDVVFNYGIFANAIAKDVVSSRFLQKYFYCLWWGLQNLSSYGQGLSTSIYMGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDEESILQGLPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQRTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVKAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSLQESFSMTPEKPVADEAEQEEEEHNTPRSNYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLSKLRKPDEPDFSEEPDD 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35692995 35696814 - ClG42_05g0284600.10 Clacu05g2846 250593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2846 727 Gene3D - 91 413 - -
Clacu05g2846 727 FunFam Cyclic nucleotide-gated ion channel 1 485 603 - -
Clacu05g2846 727 CDD CAP_ED 487 618 IPR000595 -
Clacu05g2846 727 Pfam Ion transport protein 89 414 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g2846 727 ProSiteProfiles cAMP/cGMP binding motif profile. 487 570 IPR000595 -
Clacu05g2846 727 Gene3D Jelly Rolls 485 605 IPR014710 -
Clacu05g2846 727 Gene3D Helix hairpin bin 415 478 - -
Clacu05g2846 727 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 704 - -
Clacu05g2846 727 MobiDBLite consensus disorder prediction 654 681 - -
Clacu05g2846 727 FunFam Cyclic nucleotide-gated ion channel 1 414 478 - -
Clacu05g2846 727 MobiDBLite consensus disorder prediction 707 727 - -
Clacu05g2846 727 SUPERFAMILY Voltage-gated potassium channels 85 409 - -
Clacu05g2846 727 SUPERFAMILY cAMP-binding domain-like 417 609 IPR018490 -
Clacu05g2846 727 SMART cnmp_10 487 618 IPR000595 -
Clacu05g2846 727 Pfam Cyclic nucleotide-binding domain 511 599 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2846 Clacu-Chr5:35692995 Clacu06g1389 Clacu-Chr6:24806474 3.80E-279 dispersed
Clacu05g2846 Clacu-Chr5:35692995 Clacu10g1427 Clacu-Chr10:27418634 3.00E-244 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2846 K05391 - csv:101211072 1287.71