Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2853 ATGGCGGTCGATCTGATGAGCTTTCCAAAGATGGATGATCAAATGGCTATACAGGAGGCTGCATCGCAAGGATTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAACCCTCAAGCCATGTTGATTGCTCTGATTTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTGATCTCTCTCCTCAATCGGACCGGTCACGCTAGATTCCGGCGAGGTCCGGTTTCTTCGACATCCTCCTCGTCGTGCGGTTCATCTGCTCATCTCTCTTTTCCTCAAAATCAGGCGATGAATCTCACTCCTACTTCGTTTACTTCACCGGCCGCGGTTCCTGCTCCGCCGTTCACCGCTCCGGCTTCCGTGGCTCAGCCACAGGCGAAAGTCGTCGCTGCGGCGGCGAACATCCTTCAGTCGCAGCCTCAGAGCATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCAAATCCTAAGGGAACCGATTTGGAATTTTCTAAGGAGACCTTCAGCGTCTCGTCCAGCTCCTCGTTTATGTCCTCAGCCATCACCGGAGACGGAAGCGTATCCAACGGAAAGTTAGGAAAGTCGATCTTCTTAGCACCAGCGCCGACTGCTTCCGGTGGTAAGCCGCCGCTCTCGGCGGCGCCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTGTCTGGAAAATTCTCCGGGTCAACATCTGCTTCCGGCAAATGCCATTGCTCAAAGAGAAGAAAAAATCGTACGAAGAAGACGATTCGAGTCCCAGCGATTAGTTCAAAAATCGCAGATATTCCACCGGACGAGTACTCGTGGAGGAAGTATGGTCAGAAGCCGATCAAAGGATCTCCATACCCACGGGGATATTACAAATGTAGCACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTACGAAGGGGAGCACCGCCATACGCAGAGCTCGTTGCCGGAAAATATGGCGGCTGGTGTAGCTTTAGTTTTTGAGTCAACTTGA 1056 50.95 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSCGSSAHLSFPQNQAMNLTPTSFTSPAAVPAPPFTAPASVAQPQAKVVAAAANILQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGKSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASGKCHCSKRRKNRTKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAGVALVFEST 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35743055 35744701 + ClG42_05g0285300.10 Clacu05g2853 250600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2853 351 Pfam WRKY DNA -binding domain 275 331 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2853 351 SMART WRKY_cls 273 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2853 351 SUPERFAMILY WRKY DNA-binding domain 271 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2853 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 334 IPR044810 GO:0003700(InterPro)
Clacu05g2853 351 Pfam Plant zinc cluster domain 220 271 IPR018872 -
Clacu05g2853 351 FunFam WRKY transcription factor 65 257 334 - -
Clacu05g2853 351 Gene3D WRKY domain 252 326 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2853 351 ProSiteProfiles WRKY domain profile. 268 334 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1770 Clacu-Chr1:29884634 Clacu05g2853 Clacu-Chr5:35743055 1.10E-54 dispersed
Clacu05g2853 Clacu-Chr5:35743055 Clacu06g1480 Clacu-Chr6:25749442 1.80E-69 dispersed
Clacu05g2853 Clacu-Chr5:35743055 Clacu05g2214 Clacu-Chr5:30691928 2.40E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47805 PF03106 WRKY 6.70E-26 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2853 - - - 0.0