Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2856 ATGGCGCCCTCCTTTGATTGGTGGGGAAAAGACAGTCATAGAGGAACCCCTGTTGTTGTCAAGATGGAGAATCCTAATTGGTCGATGGTTGAGTTGGAGGGTCCGTCGGAGGATGATTTTCTCATCGCTGGTGAGTCGTCGCCGACGGGTCGGACCAGAGATAAAGGCAGAGGCAAAAACGCTAAGCAACTCACGTGGGTTCTCCTCCTCAAAGCCCACAGGGCCGCTGGTTGTTTAACTTCCATTGGCTCTGCAATGGTGGACCTCGCCGCCGCCGTTAGACGCCGTGTTGCTTCTGGACGGACTGATGAGGACGACGCCGACAATGACGTCACTGTTGGAGGTAGAGAGAAAGAGAACCCGACTGTGAAAACCAGGTTCTATTCTTGTATCAAGGTGTTTCTATGGCTGTCGGTGCTTCTGTTGGGTTTTGAGATTGCGGCCTTCTTCAAGGGCTGGCATTTTGGTACTCCAAATCTTCAATTGGATTACCTTTGGGCATCGCCTTGGGGTTTCAAAGGAGCTTTTGGTTGGATTTACTCTCAGTGGGTATTGATTCGAGTGGACTATTTAGCTCCACCTCTACAGTTCTTAGCCAATGCCTGTATCATACTGTTCATCATTCAGAGCTTGGATCGTTTAATCTTATGTTTGGGTTGTTTCTGGATCCGGTTCAAGAAAATCCAACCAGTTCTTAAACCTGGAGATGAAGACCTTGAATCTGGTGAAAAGGGCTATTTCCCAATGGTTCTTGTTCAGATCCCCATGTGCAATGAAAAAGAGGTTTATCAGCAATCAATTGCTGCTATCTGCAACTTGGACTGGCCAAGAACTAAGCTGCTGATTCAAGTTCTTGATGATTCTGATGATCCAACTACCCAGTTGTTGATTAAAGAGGAGGTTCTTAAATGGCAGCAAGAGGGTGCCAACATTATTTATCGTCATCGGGTCATTAGAGATGGTTATAAGGCTGGCAACCTCAAATCCGCCATGAATTGTAGCTATGTCAAAGAATACGAATTCGTTGCCATTTTCGATGCCGATTTTCAACCCACACCTGATTTCCTTAAAAGAACTGTTCCGCATTTCAAGGACAATGAAGAGCTGGGGCTGGTTCAAGCTAGGTGGTCTTTTGTGAACAGGGATGAGAACTTGCTAACTAGGCTGCAGAACATCAATTTAGCTTTCCATTTTGAAGTAGAGCAGCAAGTGAACAGTGTCTTCCTCAACTTCTTTGGATTCAATGGCACTGCTGGTGTGTGGAGGATCAAAGCTCTCGAGGATGCCGGTGGGTGGTTAGAAAGGACCACCGTCGAGGACATGGATATCGCTGTTCGTGCTCATCTTCATGGATGGAAATTCATATTCCTAAATGATGTTGAGTGCCAGTGTGAGCTACCAGAATCTTATGAAGCTTATAGAAAACAACAACATAGATGGCATTCTGGCCCAATGCAATTGTTTCGCCTTTGTTTGCCTGCTATTATTCGATCAAAGATTAGTGTATGGAAGAAGTTCAACTTGATCTTCCTCTTCTTTTTGCTCAGAAAATTGATACTGCCCTTCTATTCCTTCACACTTTTCTGCATAATTCTACCTATGACAATGTTTGTTCCCGAGGCCGAGCTACCCGCTTGGGTCGTTTGCTATATCCCGGCCACCATGTCATTTCTAAACATCCTGCCTGCCCCAAAATCCTTCCCTTTCATTGTCCCTTACCTCCTTTTTGAGAACACCATGTCAGTCACCAAGTTCAATGCCATGATCTCAGGCCTCTTCCAGCTTGGTAGTGCCTACGAATGGGTTGTTACAAAGAAATCTGGCCGTTCCTCGGAGGGTGATCTCGTCTCCTTGGTAGAGAGAGAGCAAAAGCATCAGAGAGGAGCTTCAGCGCCCGACCTAGAAGAAATGAAGGAAGAAATTCAGAAGCAAGAGAAGAAAGCTTCTTTGCGAAAGAAGCACAACAGAATATACACGAAAGAGCTGGCATTAGCTTTCCTCCTCCTAACCGCATCGGCACGGAGCCTTCTGTCTGCACAAGGGATCCATTTCTACTTCTTGCTATTCCAGGGGATCTCGTTCCTGCTTGTCGGTTTGGACTTGATTGGCGAACAGATAGGTTGA 2124 46.14 MAPSFDWWGKDSHRGTPVVVKMENPNWSMVELEGPSEDDFLIAGESSPTGRTRDKGRGKNAKQLTWVLLLKAHRAAGCLTSIGSAMVDLAAAVRRRVASGRTDEDDADNDVTVGGREKENPTVKTRFYSCIKVFLWLSVLLLGFEIAAFFKGWHFGTPNLQLDYLWASPWGFKGAFGWIYSQWVLIRVDYLAPPLQFLANACIILFIIQSLDRLILCLGCFWIRFKKIQPVLKPGDEDLESGEKGYFPMVLVQIPMCNEKEVYQQSIAAICNLDWPRTKLLIQVLDDSDDPTTQLLIKEEVLKWQQEGANIIYRHRVIRDGYKAGNLKSAMNCSYVKEYEFVAIFDADFQPTPDFLKRTVPHFKDNEELGLVQARWSFVNRDENLLTRLQNINLAFHFEVEQQVNSVFLNFFGFNGTAGVWRIKALEDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIIRSKISVWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEREQKHQRGASAPDLEEMKEEIQKQEKKASLRKKHNRIYTKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQIG 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35769500 35771987 + ClG42_05g0285600.10 Clacu05g2856 250603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2856 707 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 240 465 IPR029044 -
Clacu05g2856 707 FunFam probable xyloglucan glycosyltransferase 5 241 466 - -
Clacu05g2856 707 SUPERFAMILY Nucleotide-diphospho-sugar transferases 250 527 IPR029044 -
Clacu05g2856 707 Pfam Glycosyl transferase family group 2 342 548 IPR001173 -
Clacu05g2856 707 MobiDBLite consensus disorder prediction 39 58 - -
Clacu05g2856 707 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 177 705 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Clacu05g2856 707 Coils Coil 634 654 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2856 Clacu-Chr5:35769500 Clacu08g1835 Clacu-Chr8:27609887 0.00E+00 dispersed
Clacu05g2856 Clacu-Chr5:35769500 Clacu02g2237 Clacu-Chr2:35476805 3.60E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2856 - - - 0.0