Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2857 ATGGGGTTTGACTGGAATGGCTGGCTGGCGATTGGCTGTGGTTTGAAGATGCAGACAGCAACTATAGCTGGAAACGGTAGAGCAGGACAAGCAACTCTTGAATTTCAAAGGGGGAGAAAAAAGATGGGTGATCTCGAGAATGATGAAATGGGTTTTAGGAATTCGAATGAAGGGTTAATGAATTGTCCATCAACAATGGCGATGGGGTCTTTCTATGGGTCGGGTTGGGATCCACTGGTTTCTTTAGGTCAAAGTGAGAATTTTGGGGCAGCTTCTTCAATGGTTTCCTCTCATGGCGAATTTTCCAATTCTTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGGACTGCACAACAAGGTGTTCAATATCCGACAGATTTGGAGATGAGTACGAAGTTGCCATGTTTTGGCAGTGGGAATTATTCAGACATGTTTGGTTCTTCTTTTGGTCTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGCACAAACATCACAAGAAAATTTACCATTATCTGGTGAAGAAACTGCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGCTCTTGATTCCACTTTCCCATTTAGTCCAAATAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAAAACTTAGGTGGGAATTCACGTGGTAAGGCAACTGGAAAACAAACTAAAGAAAAATCTAATAATAGTGCTGAAGCTCCTAAGGAAAATTACATTCATGTTCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAATCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAATATCGATATTGAGAGGATTTTATCCAAAGATATTTTCCACGCACGAGGCAGCAATGGAACTGTTCTTGGATTTGATCCCGGGTTGAGCGCTGTTTCCCCAGTCCCTCCTCACCGAATGTTTCAGTTTCAAGGGACGATGTCGAATATGGCAACCACATCCACACAGTTTCCTCCTTTGCCTCAGACAATGTTAGAAAGCGATATTCAAAGTCTTCTTCAAATGGGATTCGACTCGGGTTCGGCCCTTGACAATTTGGGACCAAACGGGCGGTTGAAACCAGAGCCCTAA 1308 43.2 MGFDWNGWLAIGCGLKMQTATIAGNGRAGQATLEFQRGRKKMGDLENDEMGFRNSNEGLMNCPSTMAMGSFYGSGWDPLVSLGQSENFGAASSMVSSHGEFSNSFPVVLENHGGSGTAQQGVQYPTDLEMSTKLPCFGSGNYSDMFGSSFGLAGQILGGCSSNYRNAQTSQENLPLSGEETAVGSPNGKIRKRALDSTFPFSPNKKSEVKLKKDVSGDSSSTQEEKNAEMEQNLGGNSRGKATGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNGTVLGFDPGLSAVSPVPPHRMFQFQGTMSNMATTSTQFPPLPQTMLESDIQSLLQMGFDSGSALDNLGPNGRLKPEP 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35779022 35782750 - ClG42_05g0285700.10 Clacu05g2857 250604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2857 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 336 IPR036638 GO:0046983(InterPro)
Clacu05g2857 435 MobiDBLite consensus disorder prediction 206 220 - -
Clacu05g2857 435 CDD bHLH_AtBPE_like 261 346 - -
Clacu05g2857 435 MobiDBLite consensus disorder prediction 194 281 - -
Clacu05g2857 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 321 IPR011598 GO:0046983(InterPro)
Clacu05g2857 435 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 137 397 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Clacu05g2857 435 SMART finulus 277 327 IPR011598 GO:0046983(InterPro)
Clacu05g2857 435 Gene3D - 268 340 IPR036638 GO:0046983(InterPro)
Clacu05g2857 435 MobiDBLite consensus disorder prediction 221 251 - -
Clacu05g2857 435 Pfam Helix-loop-helix DNA-binding domain 274 322 IPR011598 GO:0046983(InterPro)
Clacu05g2857 435 FunFam Basic helix-loop-helix transcription factor 268 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2534 Clacu-Chr5:33423764 Clacu05g2857 Clacu-Chr5:35779022 3.00E-44 dispersed
Clacu05g2857 Clacu-Chr5:35779022 Clacu08g1834 Clacu-Chr8:27605526 1.80E-47 dispersed
Clacu05g2857 Clacu-Chr5:35779022 Clacu02g0522 Clacu-Chr2:4882399 7.30E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47806 PF00010 HLH 4.60E-06 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2857 - - - 0.0