Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2858 ATGGCTATGGAAGTTACTTCTGAGTCTCAGCAACATTCTCACTACCATTACCATAGCCAGGCAAGTTCAGCAGGAGTTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCACCACTCCAATGGAGATTTTTATTTTTCTCCCTTGTCTGTAATGCCACTTAAGTCAGATGGGTCTCTTTGTATCATGGAATCAATCAGCGCATCACAACCTCAAGAAACATTGCCAAATATCTCACCAAAATTGGAGGACTTTCTTGGTGGTGCAACTCATGGAAAAGAGGCCACAACTCTAAGCTTAGACAACATATATTACAATCAAAATAATGAGGTTGATTCAGAGAGTCAACATTCTTTGGATCTTTTTAAGCAACAAGAGCAAATACATATTCTTTTTCATTCTCAGCGATATTATTCTGGACTACTCCAGTATCCTACTGAGGATCCTAACAAGGAGTCTCATATTGCAAGTTGTTATTCTGAAATTCAACAAGATATGGAGCAGCGGATAAATGGCTGCTGCTTTGGAGGGATGAATTGCCAAGATTTGCAGCCACTTAGCTTGTCCACGAGTCCTAGTTCTCAGTCTAGTTGTGTTACTGCTCCAAGCCAAATTTCTCAACCTGGACCAGCCACCATGGAAACAAAGAAAAGGGCTTTCGACAATCGAAAGCAGTCGGTCCATCGGAAGTCAATCGACACGTTCGGACAAAGAACTTCGCAGTACAGAGGTGTGACAAGGCATAGATGGACTGGTAGATATGAAGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACGAGGAAAGGAAGACAAGTGTATCTTGGTGGCTATGATATGGAGGAAAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCAACACATTTAAACTTCCCGCTAAAGAACTATCAACTTCAAATTGAAGAAATGAAGAATATGAACCGTCAAGAATACGTTGCACACCTGAGAAGGAAAAGCAATGGATTCTCCAGGGGAGCTTCCATATACAGGGGAGTAACTAGACATCATCAACATGGGAGATGGCAAGCTCGAATCGGAAGAGTCGCAGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTTCGCGGTGTAAATGCTATTACAAACTTCGACACGTCAAGGTACAATGTAGAAAGGATCATAGCAAGCAGTAGCCTCCTTTCAGGAGAGTTTGCGAGGCGAAACACAGAACAAAAACCAACCAACACCATCAAACATAAAGATCCAAAACAGAACATTGATAAAATTGATGATCCCTCGAAGATATCAAACAACTTGGACCGGAAGGTGGTATTCAACAACAACCCGATATTGGATCCAAGTGCAATGGTAATGGTGAATTTTTCAAGCAAGTACAAGGCTCACTTCCCCAATGCTTCCTCTGCTGTGAGCAGCAGCAGCAGCTCAAGGGAAACAAGTCCTGATAAGTGA 1524 42.39 MAMEVTSESQQHSHYHYHSQASSAGVVSNTMSNSFLASHHSNGDFYFSPLSVMPLKSDGSLCIMESISASQPQETLPNISPKLEDFLGGATHGKEATTLSLDNIYYNQNNEVDSESQHSLDLFKQQEQIHILFHSQRYYSGLLQYPTEDPNKESHIASCYSEIQQDMEQRINGCCFGGMNCQDLQPLSLSTSPSSQSSCVTAPSQISQPGPATMETKKRAFDNRKQSVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQLQIEEMKNMNRQEYVAHLRRKSNGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAITNFDTSRYNVERIIASSSLLSGEFARRNTEQKPTNTIKHKDPKQNIDKIDDPSKISNNLDRKVVFNNNPILDPSAMVMVNFSSKYKAHFPNASSAVSSSSSSRETSPDK 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35791000 35793521 - ClG42_05g0285800.10 Clacu05g2858 250605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2858 507 CDD AP2 241 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2858 507 SMART rav1_2 242 314 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2858 507 SMART rav1_2 344 408 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2858 507 FunFam AP2-like ethylene-responsive transcription factor ANT 241 310 - -
Clacu05g2858 507 MobiDBLite consensus disorder prediction 424 452 - -
Clacu05g2858 507 SUPERFAMILY DNA-binding domain 343 403 IPR016177 GO:0003677(InterPro)
Clacu05g2858 507 ProSiteProfiles AP2/ERF domain profile. 242 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2858 507 CDD AP2 343 404 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2858 507 MobiDBLite consensus disorder prediction 430 452 - -
Clacu05g2858 507 Pfam AP2 domain 242 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2858 507 Pfam AP2 domain 345 394 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2858 507 Gene3D AP2/ERF domain 241 310 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2858 507 Gene3D AP2/ERF domain 344 404 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2858 507 ProSiteProfiles AP2/ERF domain profile. 344 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2858 507 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2858 507 PRINTS Ethylene responsive element binding protein signature 384 404 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2858 507 MobiDBLite consensus disorder prediction 488 507 - -
Clacu05g2858 507 MobiDBLite consensus disorder prediction 195 229 - -
Clacu05g2858 507 FunFam AP2-like ethylene-responsive transcription factor 343 404 - -
Clacu05g2858 507 MobiDBLite consensus disorder prediction 1 20 - -
Clacu05g2858 507 MobiDBLite consensus disorder prediction 195 212 - -
Clacu05g2858 507 SUPERFAMILY DNA-binding domain 241 309 IPR016177 GO:0003677(InterPro)
Clacu05g2858 507 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 154 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1849 Clacu-Chr1:30619421 Clacu05g2858 Clacu-Chr5:35791000 7.10E-133 dispersed
Clacu05g2858 Clacu-Chr5:35791000 Clacu07g1407 Clacu-Chr7:28901855 1.40E-102 dispersed
Clacu05g2858 Clacu-Chr5:35791000 Clacu08g1833 Clacu-Chr8:27592094 1.10E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47807 PF00847 AP2 1.10E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2858 K09285 - csv:101212143 774.237