Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2867 ATGGCCACTCCCCTTTTCCGGTCGTCGGTTTTCTTGGCTGTTTTTGTTTCTCAGGTGGTCTTCTCCGCCTCCGCCTCCGCCTCATCCTGGACAGTCAAATATCTGCCTGGATTCTCAGGTCCTCTTCCGTTTGAACTTGAAACTGGGTATGTGGGAGTGGGGGATTCGGAGGAAGTTCAGTTGTTTTATTACTTTGTCAAATCCCAAGGAAATCCCCAAACCGATCCTCTAATGACTTGGTTGGCCGGCGGCCCTGGTTGCTCTGCTTTCTCTGGTCTCGCCTTTGAAATTGGTCCTATAAATTTCAAGGTAGAGCCATACAATGGAACCGTACCTCAACTAATCTTGAATCCTGATGCATGGACTAAGAAAGCTAGTATTCTATTTATAGATTCGCCTGTTGGCACTGGATTTTCATATAGTCGAACTCTACGAGGCTCCAAAAGAGGAGATTTTTTACAAGTAGAACAAATTCATCAATTTTTAAGGAAGTGGCTTGCAAACCACCCAGAATTTATATCTAATCCATTTTACGTTGGTGGAGACTCTTACTCTGGTATGATTGTTCCACCTGTTACTCAAGCAATCTCAGAAGGAAACAAACACGAAGTCCCACTTATAAACCTCCAGGGATACATCGTGGGAAATCCAGTCAGCGTACGTAAAACAAATGATAATTCTAGGATTCCTTATGCTTATAGATTGACGCTCATCTCTACAGAATTGTATGAGTCATTAACAAATAGTTGCAAAGGAGAATATGAAAATGTTGATCCAAATAACGAGGAGTGCGTCAATCATGTATCAAACTTCAAAAAGTGTGTGGGTAGAATCAATTATTGGTGTATTTCTTGCCCTTATTGTGAGGATGTATCTTCGGCGCCACAAGATAAGTTTGGACGGCGAAGATCTCTCTACAACACCTCCCAGGAACTGCTTCTTGCTACCAGAGTGTTACCTCCTCCTTCTCTTGACTGTCAAGAGTATAAGTACTACCTTAGTTACTATTGGGCAAACGATGACCAAGTTCGAAAAGCACTTCACATACGTGAGGGAACTATTGAAGAATGGATAAGATGCCAGAATCGTAAAAGTTACGAATATGATATTATGAGTGTTGTTCCTTATCATGCGAATCTTAGTTTTAAAGGTTATCGATCTTTGGTTTTTAGTGGGGATCATGATCTGATGGTGCCAGTCATAGACACTGAAGCATGGTTAAGGTCGCTAAGTTATCCTATTGTGGATGATTGGAGACCTTGGTTTAACACGGAAGATCAAATACTTGGATACACAAGAACATATGCAAATAACATGACATTTGCGACCATTAAAGGTGGAGGGCACACACCAGAATTCATGCAAACTCAAAGTCGCGTAATGTTTTATAGATGGATACAAGGAGAATCTTTATGA 1416 41.31 MATPLFRSSVFLAVFVSQVVFSASASASSWTVKYLPGFSGPLPFELETGYVGVGDSEEVQLFYYFVKSQGNPQTDPLMTWLAGGPGCSAFSGLAFEIGPINFKVEPYNGTVPQLILNPDAWTKKASILFIDSPVGTGFSYSRTLRGSKRGDFLQVEQIHQFLRKWLANHPEFISNPFYVGGDSYSGMIVPPVTQAISEGNKHEVPLINLQGYIVGNPVSVRKTNDNSRIPYAYRLTLISTELYESLTNSCKGEYENVDPNNEECVNHVSNFKKCVGRINYWCISCPYCEDVSSAPQDKFGRRRSLYNTSQELLLATRVLPPPSLDCQEYKYYLSYYWANDDQVRKALHIREGTIEEWIRCQNRKSYEYDIMSVVPYHANLSFKGYRSLVFSGDHDLMVPVIDTEAWLRSLSYPIVDDWRPWFNTEDQILGYTRTYANNMTFATIKGGGHTPEFMQTQSRVMFYRWIQGESL 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35861185 35864840 + ClG42_05g0286700.10 Clacu05g2867 250614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2867 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2867 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2867 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2867 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2867 471 SUPERFAMILY alpha/beta-Hydrolases 31 469 IPR029058 -
Clacu05g2867 471 Gene3D alpha/beta hydrolase 25 299 IPR029058 -
Clacu05g2867 471 FunFam Carboxypeptidase 325 470 - -
Clacu05g2867 471 FunFam Serine carboxypeptidase-like 11 26 471 - -
Clacu05g2867 471 Gene3D - 324 471 - -
Clacu05g2867 471 Pfam Serine carboxypeptidase 36 468 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2867 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 465 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0355 Clacu-Chr4:12510035 Clacu05g2867 Clacu-Chr5:35861185 4.80E-102 dispersed
Clacu05g2867 Clacu-Chr5:35861185 Clacu09g0784 Clacu-Chr9:7038552 7.70E-92 dispersed
Clacu05g2867 Clacu-Chr5:35861185 Clacu05g2868 Clacu-Chr5:35867962 8.40E-163 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2867 K16296 - csv:101210918 540.036