Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2868 ATGGCCACCTTCGCCACCGTCCTTTTCCGATGCTCTGTTTTCCTCCTCCTACTTTTTCAGCTCTTCTCCGCCGCTGCCGCCACCGGAGGATCATACTCGAGGGTGAAGTATCTGCCGGGATTCTCAGGACCTCTTCCCTTCCAACTAGAAACTGGATACGTTGGTGTGGGAGATTCAGATCAATTTCAGATTTTTCACTATTTTATCAAATCTGAAGCAAATCCCAAAACGGATCCTCTCATTATTTGGCTTACCGGAGGTCCCGGTTGCTCTGCCCTCTCCGGACTTGCCTTTGAAATTGGTCCTATAAGTTTTGATGAAGAATCAAACGAAGGGAGCATTCCTCGATTAATCTTAAATCCCTATTCATGGACGAAGAAATGTAGCATAATATTTGTAGATTTACCTGCGGGGACTGGATTTTCATATGATACAACTTCGTCTACCTTTAAACCGGGAGATTTTAATCAAATTCACCACTATCTTCAATTCTTGAGAAAGTGGTTTGTTGATCATCCAGAGTTTACAACAAATCCATTCTATATTGGTGGAGATTCATACTCTGGGATGATTGTTCCGGTAGTTGCTCAAAAAATTGTAGAAGGAAATACACATGATTTTTCATTTATAAATTTTCAGGGCTATATATTGGGAAATCCTTACACTATTCGTGATTCAGGTGACAATTTTGCAATTTCTTTTGCTCATAGGATGACTCTTATATCTGATGAATTATTTGAGTCATTGAAAACTAGTTGTAAAGGAAAATATGTGAACATTGATCCAAGCAATGTGGAGTGTTTAAGACATTACGAGACGTATAAAAAGTGTATATCGAAAGTCGAGCCTGCAAATATTTTGGATCCGAAGTGTCAATTTCAGTCTCCAAAGCAACAAGATGTACATGATCGAAGATCTCTCAATAGCATCTCAAAGTCGTTGTTTGATCAAAGCACACCACTCTCCTTTCGTAGTAGTTGTCCTGAGTTTAAATACAAACTTTCTAATGATTGGGCTAACGCGGAACAAGTTCGGAAGGCACTTCACATTCGTGAGGGAAGTATTGGAGAATGGATAAGATGTAAGAACAAAAAAGAAATGTATAATTTTGAACTCGATACTGTTTTCCCTTATCATGTGAACCTTAGTTCTAAAGGATATCGATCTTTGATCTATAGTGGCGATCATGATATGTTAGTGCCCCATTTGGACACTCAGGCATGGATCAAAGCTTTAAACTACTCCATTGTTGATGATTGGAGACCATGGTTTATCTTGGATCAAGTAGCCGGATATACCCGATACTATGCAAATAAGATAACATTTGCAACTATAAAAGGTGGAGGGCACACAGCAGAATACACAAAAAGAGAATGCAGCATAATGTTTAGCAGATGGATATCAGGACAATCCTTATGA 1419 39.04 MATFATVLFRCSVFLLLLFQLFSAAAATGGSYSRVKYLPGFSGPLPFQLETGYVGVGDSDQFQIFHYFIKSEANPKTDPLIIWLTGGPGCSALSGLAFEIGPISFDEESNEGSIPRLILNPYSWTKKCSIIFVDLPAGTGFSYDTTSSTFKPGDFNQIHHYLQFLRKWFVDHPEFTTNPFYIGGDSYSGMIVPVVAQKIVEGNTHDFSFINFQGYILGNPYTIRDSGDNFAISFAHRMTLISDELFESLKTSCKGKYVNIDPSNVECLRHYETYKKCISKVEPANILDPKCQFQSPKQQDVHDRRSLNSISKSLFDQSTPLSFRSSCPEFKYKLSNDWANAEQVRKALHIREGSIGEWIRCKNKKEMYNFELDTVFPYHVNLSSKGYRSLIYSGDHDMLVPHLDTQAWIKALNYSIVDDWRPWFILDQVAGYTRYYANKITFATIKGGGHTAEYTKRECSIMFSRWISGQSL 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35867962 35870723 + ClG42_05g0286800.10 Clacu05g2868 250615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2868 472 Gene3D alpha/beta hydrolase 30 302 IPR029058 -
Clacu05g2868 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2868 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 440 453 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2868 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2868 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2868 472 FunFam Carboxypeptidase 326 471 - -
Clacu05g2868 472 FunFam Serine carboxypeptidase-like 11 29 472 - -
Clacu05g2868 472 SUPERFAMILY alpha/beta-Hydrolases 35 471 IPR029058 -
Clacu05g2868 472 Gene3D - 326 472 - -
Clacu05g2868 472 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 466 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Clacu05g2868 472 Pfam Serine carboxypeptidase 39 469 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2264 Clacu-Chr5:31016737 Clacu05g2868 Clacu-Chr5:35867962 1.20E-185 dispersed
Clacu05g2265 Clacu-Chr5:31025333 Clacu05g2868 Clacu-Chr5:35867962 3.80E-184 dispersed
Clacu05g2266 Clacu-Chr5:31040020 Clacu05g2868 Clacu-Chr5:35867962 8.90E-161 dispersed
Clacu05g2267 Clacu-Chr5:31049870 Clacu05g2868 Clacu-Chr5:35867962 3.30E-10 dispersed
Clacu05g2868 Clacu-Chr5:35867962 Clacu09g0784 Clacu-Chr9:7038552 5.40E-93 dispersed
Clacu05g2867 Clacu-Chr5:35861185 Clacu05g2868 Clacu-Chr5:35867962 8.40E-163 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2868 K16296 - csv:101207623 600.127