Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2878 ATGCTGTTTATTGTCGTATCACTACCTAAGTTGCCGTCTACCCAGATTTCTTTGGTGGGGTTCTCATTATCTTTTGAGGTATTTCACGTTTTCTTTGATTTCTTCTTTTCCTGGGATTTGGGCTGTTCTGATTTGGGGTTCTTGTTAATGGGTCTTTTTTGTCTTTTTGGGATGCTTTTGTTTTCGGATGTTCTATTCTGCATTCCGTTTCTGGGTTGTCTCAATGTGACTTTGAATGTTTCTGGTTCTTTGATTGGTTTACTTTGTGTTGCTGCTGTTCTATTATCTATAGGCTTCAATTTTCTTTTAGTTAAGTTTTTGTATGGAGTTCTTGGTTTAGGAAGTTTGCGGGGAGGTGGAAGGTTGGTTTGCTATCTTGGATATCCTAAGAAAGAACTTCTGGCGAGGGAAACCTTGTCTCTATGCACTCTAGTGTTGTTGAGATATCTAAGCTTCACCATAAGAATCCAGAACATGCAATCAGGGGTCTTTTGTCCCATCAGCACTCTATTGATAAAAATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAACATAGCTGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCAGGTTGCAAGCCTAGGGTGCACAACCGATGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTAGGCATATACCCATACTACAGCAAGCTGAAACACGAATCTCAATGTGTGTATCGGCCCTATAACTGTCCATATGCGGGATCGGAATGCACAGTTATTGGCGATATCCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAGGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTTGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTTTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGAATGTTCTTTACTTTCTAGGATCTATTGCCAGTTTCAGGATTCTTTTCTTTCATGCTCTCTTGTGATTAGGGATCAATCTGTCAGAATTTTCCTAGGCCTATTTGAGATGTCACTCAAGTTACACCATATTGATTTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTAAAGGATCTCTCGGCTCAGTCTGCCAATAAGTACTGTGCCGATTGTGGTTCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCGGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGTGTAGGTGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCCAGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTGGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTTGCAAGTCTAGACGATCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCACTCTCGCACAGCGCTTCCAGTACTGATGTAAACCTAGAAAGGAGGAATTATGAAAAACTACCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCCGAACATAGGAACTGCAAGAAGGGAAATGCAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTCGTTGGTTTAATCAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGACGAGTGATCCATATGTAATTCTCTCGTTGGGCCACCAATCAGTGAAGACACGAGTTATAAAGAGTAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACCGCAGCCCGAGCCTGCGAGAGGTCCACAATCAGTGAACCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 2637 42.85 MLFIVVSLPKLPSTQISLVGFSLSFEVFHVFFDFFFSWDLGCSDLGFLLMGLFCLFGMLLFSDVLFCIPFLGCLNVTLNVSGSLIGLLCVAAVLLSIGFNFLLVKFLYGVLGLGSLRGGGRLVCYLGYPKKELLARETLSLCTLVLLRYLSFTIRIQNMQSGVFCPISTLLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRECSLLSRIYCQFQDSFLSCSLVIRDQSVRIFLGLFEMSLKLHHIDLKGGSGTQKRLKDLSAQSANKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYEVCIPDGNKKPKPDSSIEERLDFIRKKYELLQFASLDDQFFCPFPPPQKRNSSLSHSASSTDVNLERRNYEKLPTKTRIGSAFRNSWGRKDSEHRNCKKGNANALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35942165 35954145 + ClG42_05g0287800.10 Clacu05g2878 250625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2878 878 SUPERFAMILY RING/U-box 224 270 - -
Clacu05g2878 878 Gene3D C2 domain 721 875 IPR035892 -
Clacu05g2878 878 SMART C2_3c 723 818 IPR000008 -
Clacu05g2878 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 281 IPR013083 -
Clacu05g2878 878 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 339 469 IPR008974 GO:0005515(InterPro)
Clacu05g2878 878 FunFam E3 ubiquitin-protein ligase SINAT3 282 338 - -
Clacu05g2878 878 SUPERFAMILY TRAF domain-like 283 465 - -
Clacu05g2878 878 ProSiteProfiles Zinc finger SIAH-type profile. 283 343 IPR013010 GO:0008270(InterPro)
Clacu05g2878 878 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 230 265 IPR049548 -
Clacu05g2878 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 338 IPR013083 -
Clacu05g2878 878 ProSiteProfiles ARF GTPase-activating proteins domain profile. 522 636 IPR001164 GO:0005096(InterPro)
Clacu05g2878 878 Pfam Sina, TRAF-like domain 374 468 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Clacu05g2878 878 Pfam Sina, zinc finger 279 354 - -
Clacu05g2878 878 CDD RING-HC_SIAHs 228 266 - -
Clacu05g2878 878 SUPERFAMILY ArfGap/RecO-like zinc finger 522 637 IPR037278 -
Clacu05g2878 878 ProSiteProfiles Zinc finger RING-type profile. 230 266 IPR001841 -
Clacu05g2878 878 CDD Sina 344 469 - -
Clacu05g2878 878 FunFam E3 ubiquitin-protein ligase SINAT5-like 339 471 - -
Clacu05g2878 878 SMART arf_gap_3 522 643 IPR001164 GO:0005096(InterPro)
Clacu05g2878 878 Gene3D Arf GTPase activating protein 511 643 IPR038508 -
Clacu05g2878 878 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 720 878 - -
Clacu05g2878 878 PRINTS HIV Rev interacting protein signature 534 553 IPR001164 GO:0005096(InterPro)
Clacu05g2878 878 PRINTS HIV Rev interacting protein signature 574 595 IPR001164 GO:0005096(InterPro)
Clacu05g2878 878 PRINTS HIV Rev interacting protein signature 553 570 IPR001164 GO:0005096(InterPro)
Clacu05g2878 878 Pfam C2 domain 723 811 IPR000008 -
Clacu05g2878 878 FunFam E3 ubiquitin-protein ligase SINAT5-like 188 281 - -
Clacu05g2878 878 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 721 815 IPR035892 -
Clacu05g2878 878 ProSiteProfiles C2 domain profile. 704 820 IPR000008 -
Clacu05g2878 878 CDD C2_ArfGAP 721 865 - -
Clacu05g2878 878 CDD ArfGap 525 631 - -
Clacu05g2878 878 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 518 878 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Clacu05g2878 878 FunFam stromal membrane-associated protein 1 isoform X1 512 642 - -
Clacu05g2878 878 Pfam Putative GTPase activating protein for Arf 523 637 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0774 Clacu-Chr1:8395480 Clacu05g2878 Clacu-Chr5:35942165 5.90E-168 dispersed
Clacu01g0776 Clacu-Chr1:8411758 Clacu05g2878 Clacu-Chr5:35942165 1.10E-140 dispersed
Clacu03g0630 Clacu-Chr3:6637998 Clacu05g2878 Clacu-Chr5:35942165 9.60E-89 dispersed
Clacu05g2878 Clacu-Chr5:35942165 Clacu06g0130 Clacu-Chr6:1423538 1.30E-124 dispersed
Clacu05g2878 Clacu-Chr5:35942165 Clacu01g2594 Clacu-Chr1:36212717 3.00E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2878 K04506 - csv:101221541 708.753