Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2882 ATGGCCCTTCTCTCTGCTGAGCCTCGATTTCATGTCTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAAGCACGCATTCTCCTATTTCCCCTGAAAATCATCATCATCATCATCATCATCAACAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTAAAACCAGTGAAATTATCTGATGTCAATAAGCTTAAGCCTTTCATATGTAGAGGTAAAGCCAAGGAAATGGATTTCAACAATCTCAAGAGAAAGGAAATGGAAAAGAGCCAATCATCTGAGAGAACAAGAACAAAATACAATGAACTTTTCTGA 564 39.18 MALLSAEPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPISPENHHHHHHHQQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTKYNELF 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35979440 35980924 - ClG42_05g0288200.10 Clacu05g2882 250629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2882 187 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 177 IPR045279 GO:0009736(InterPro)
Clacu05g2882 187 MobiDBLite consensus disorder prediction 168 187 - -
Clacu05g2882 187 Gene3D - 11 184 - -
Clacu05g2882 187 SUPERFAMILY CheY-like 9 145 IPR011006 -
Clacu05g2882 187 CDD REC_typeA_ARR 12 148 - -
Clacu05g2882 187 Pfam Response regulator receiver domain 75 145 IPR001789 GO:0000160(InterPro)
Clacu05g2882 187 SMART REC_2 10 149 IPR001789 GO:0000160(InterPro)
Clacu05g2882 187 ProSiteProfiles Response regulatory domain profile. 11 153 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0751 Clacu-Chr1:8107677 Clacu05g2882 Clacu-Chr5:35979440 1.70E-51 dispersed
Clacu05g2695 Clacu-Chr5:34526605 Clacu05g2882 Clacu-Chr5:35979440 4.10E-38 dispersed
Clacu05g2882 Clacu-Chr5:35979440 Clacu10g1595 Clacu-Chr10:29270778 1.00E-50 dispersed
Clacu05g2882 Clacu-Chr5:35979440 Clacu06g1772 Clacu-Chr6:28263442 6.50E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47810 PF00072 Response_reg 5.70E-20 CL0304 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2882 K14492 - csv:101207245 289.656