Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2897 ATGGATCAATTTTCCAAAGACCTCGACAAGGAAATCTGCAACGCGGAAAAATTTGAGAGAGAAGAAGAAGACGACGACGGCGACGAGGAGCAAGAAGAGGGACAAGACGACTGGGACGATTGGAATGCAGACGAGGAAGAAGGAGAAGAAGCATTTGATTCGAATTTTCTGTGTCTGTTCTGCAACTCAAAGTATAATCACTGCGACACTCTGTTCAACCATTGCAACTCCGTCCACTATTTCGATTTTCACAGCATCAGAAGGGCTCTGGGTTTAGACTTCTATGGTTCCTTCAAAATTATCAACTACATACGATCTCAGGTAGCAGATAATAGGTGCTGGAGCTGTGGTCTCTCGTGTAAATCAAACCAGGATTTACAGAACCATTTACACAAAATTTTAAATCTCGATGACATAAAGGCTCTTTGGGATGATGATAAATATCTAAAACCCTTCAGGCAAGATGATCCCCTCCTGTACAGTTTTACAGAAGACGAGGAGGATGATGATGAAATGACTAGAGAAAATCTTCCATTTCATCCAAACCAAAACAAAGAAAATGGAGTGGAAGATTGTAGTTCTACTTCACATGGTTATTTGAATGCTCCAAGCAACTTAGAGGGCGAGATTGAGAATACTGTGAAAACCACGGAGACTTTGGGGTTGAAAGATGAGAAGCAGGAAGACATTCAATTTAAATTAGCCAGACGGAATTTTGATAGAAAGGATATAAAAAATGCAAATGAAAGTTACTTCGGTTCATATAGCTCTTTTGGCATACACAAAGAGATGTTAAGCGACAAGGTCAGAATGGAAGCTTATATGGAGGCGATTTTGCAAAATCCATCTCTGTTCCACAATGCTGCTGTGATGGATGTAGGCTGTGGAACAGGCATACTTAGTCTTTTTGCTGCAAAAGCAGGTGCATCAAGAGTTATTGCAGTTGAAGCGAGTGAAAAGATGGCAGCAGTGGCCACCCAAATTGCAAAAGACAATGGCCTCTGGTGGAACAGGAAACAAACTAGAGATTGTGACATGTCAAGTGGGACTATAGAAGTGGTTCATGGTATGGTAGAAGAACTCGATAAGAACTTAGAGATTGCGCCTCACAGTGTTGATGTATTATTGAGTGAATGGATGGGCTATTGCTTGTTGTACGAATCAATGCTCAGCTCAGTACTCTTTGCAAGGGATCGGTGGTTGAAGCCTGGAGGTGCAATCTTACCAGATACAGCCACAATTCTTGTTGCTGGATTTGGAGTTGGTGGAACTAGTCTTCCATTTTGGGAAAATGTGTATGGTTTTAGAATGTCTTGTGTAGGGAAGGAACTTGTAAAAGATGCTGCCAACACTCCCATCGTTGATATTGTGGATGTTAATGATTTAGTAACTAGTCCTGCAATCCTCCATACTTTCGATCTAGCAACCATGCATCCTGATGAAGTAGACTTCACTGCAAGTACCGAGTTGGAACCAAATTCACATGATCCTTCAAACTCAAATAGTGTTGAAGTTGAAGCATCTCGCTGTCATGGAGTTGTCCTATGGTTTGAAACTGGTTTTACAAGCAGATTTTGCAAGGAATCACCGGCTGTTCTGTCTACATCTCCATACACTCCCAAAACTCACTGGTCTCAAACCATATTAACCTTCAGAGAGCCGGTTGCTATAACATCTAGAAAGTCAAGAACCAACATATCAGCACCAGTAGGTAGCCATGCCTGCCCTGCTGTCAAAGTTCATTTGCGTCTTAGCATTGCCCGTGCGCCTGAACATCGAAGCATTGACATTTCACTAGAGACTACTGGGATCGCTGGTGATGGTAGGAAGCACCACTGGCCTGTACAGCTGTTCACACTAAGATAG 1866 42.34 MDQFSKDLDKEICNAEKFEREEEDDDGDEEQEEGQDDWDDWNADEEEGEEAFDSNFLCLFCNSKYNHCDTLFNHCNSVHYFDFHSIRRALGLDFYGSFKIINYIRSQVADNRCWSCGLSCKSNQDLQNHLHKILNLDDIKALWDDDKYLKPFRQDDPLLYSFTEDEEDDDEMTRENLPFHPNQNKENGVEDCSSTSHGYLNAPSNLEGEIENTVKTTETLGLKDEKQEDIQFKLARRNFDRKDIKNANESYFGSYSSFGIHKEMLSDKVRMEAYMEAILQNPSLFHNAAVMDVGCGTGILSLFAAKAGASRVIAVEASEKMAAVATQIAKDNGLWWNRKQTRDCDMSSGTIEVVHGMVEELDKNLEIAPHSVDVLLSEWMGYCLLYESMLSSVLFARDRWLKPGGAILPDTATILVAGFGVGGTSLPFWENVYGFRMSCVGKELVKDAANTPIVDIVDVNDLVTSPAILHTFDLATMHPDEVDFTASTELEPNSHDPSNSNSVEVEASRCHGVVLWFETGFTSRFCKESPAVLSTSPYTPKTHWSQTILTFREPVAITSRKSRTNISAPVGSHACPAVKVHLRLSIARAPEHRSIDISLETTGIAGDGRKHHWPVQLFTLR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36253577 36257757 + ClG42_05g0289700.10 Clacu05g2897 250644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2897 621 Gene3D Vaccinia Virus protein VP39 240 409 IPR029063 -
Clacu05g2897 621 MobiDBLite consensus disorder prediction 18 41 - -
Clacu05g2897 621 SUPERFAMILY beta-beta-alpha zinc fingers 34 173 IPR036236 -
Clacu05g2897 621 ProSitePatterns Zinc finger C2H2 type domain signature. 58 79 IPR013087 -
Clacu05g2897 621 Pfam Methyltransferase domain 290 405 IPR041698 -
Clacu05g2897 621 Pfam Protein arginine N-methyltransferase 3, C2H2 zinc finger domain 87 151 IPR049482 -
Clacu05g2897 621 FunFam Protein arginine N-methyltransferase 6 244 409 - -
Clacu05g2897 621 CDD AdoMet_MTases 290 408 - -
Clacu05g2897 621 MobiDBLite consensus disorder prediction 1 41 - -
Clacu05g2897 621 Pfam Arginine methyltransferase oligomerization subdomain 411 559 - -
Clacu05g2897 621 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 219 602 IPR025799 GO:0005634(PANTHER)|GO:0016274(InterPro)|GO:0018216(InterPro)
Clacu05g2897 621 MobiDBLite consensus disorder prediction 1 17 - -
Clacu05g2897 621 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 254 559 IPR029063 -
Clacu05g2897 621 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 248 579 IPR025799 GO:0016274(InterPro)|GO:0018216(InterPro)
Clacu05g2897 621 Gene3D - 412 612 - -
Clacu05g2897 621 Coils Coil 1 21 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1618 Clacu-Chr3:29815716 Clacu05g2897 Clacu-Chr5:36253577 6.90E-57 dispersed
Clacu05g2897 Clacu-Chr5:36253577 Clacu06g1166 Clacu-Chr6:22117120 3.10E-32 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2897 K11436 - csv:101215999 1048.5