Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2898 ATGATGGCTTGTGCTTCACAGGCGCTGATTGCTGCAAATTCATGCTCGTTTCCGAGCCATAGAATCATTAGAAAGTCACAGAGACTCTTCAATCAAAGTGCTTCCAATCTTGTTTTCACGGTCAGAGCTTCATCTGAAGATTCCGAATGCAATGTCGACGAATGTGCTCCAGATAAAGAGGTGGGGAAAATAAGTATGGAATGGCTAGCTGGGGAGAAAACTAAAGTGGTTGGGACATACCCACCGACGAAAAAAGGGTGGACTGGCTACGTAGAGAAGGACACTGCAGGACAAACAAATATATATTCCGTCGAACCAGTAGTTTATGTAGCAGAAAGTGCTATAAGCTCGGGGACTGCAGGTTCTTCTTCTGAAGGAGCTGAGAACACACTGGCAATTGCTGGTGGAATGGCACTCATTGCGGTTGCTGCAGCTTCATCTATACTGCTTCAAGTTGGTAAGAAACCACCTGAAGTGAAAACCGTTGAATACACTGGACCCTCACTCAGTTACTATATCAACAAGTTCAATACACGAGAAATTGTCCAACAACCGGTACAAAGTGAACCCGAATCGTCCTCTCAAGTCGACAGCGTCGCTCCTGAAGTAACGGAGATTCAAATTCAATCAGACATTGCTGCTCCTGAAGTAACGGATATTCAAGTTGAGTCCCAAACGACAGAGCCATCCTCTTCGGCTGTAGCCAGTGTCTCTTGGGGTAGTAATGGAAAGATGAGGGTTGAATCAGTTAAATTTTCCACGGAGAAAGCCGGCCACTGGAAGGGTTTCTTTACTGGATCTGCAAGTGCGTTTTTTGCTCCCTCTGCTGTCGAGTGCTGTGGTGATTTTCGTACTATGAATTCCTTGGTTACTCCTAGCACTGTACTCATGGAAAGCGTGGAGGAAACGAAGCCATCAGCTACAAATAGTTGCCATACTGATGGCGGAACAAACACTGCAGACGTTCAATTTTCAGGATTGTGTCAGAATGGACTACATCTGGATGAGAATTGTTGTAATCAAGCATTAAAGTTATTTAGAGAGACGAAGCACCTTTTGGTTGCAAATATATCAGCAATCGGGAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCCTTTGTTTTATATACTATGAAGAGGCTGAGAGATAAGAATTCAGAGAGTTCGCATCAGGGATCTGAGAACAACAGCTTCACTTTATGCCACATACTGAGAGTTTGCAAGCTGAACATAGTGGAATTTTTTAAAGAGCTGCCGCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTCTATGGTGCTGACTGGGAGAATAGACTAGTGGCAAAGGAGTTGCAGGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGAGAGTTCTTCTCCACCAATGATGCTAATGTTGAAAAGCAGTCAGCTATATCCTGCCCCACCGGTTACTTATCTGATTACCATCGCTTTGGATGGTTATTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCATATTCCAGTTCGTTTCAGAAACTTCAGCATTCTTGACTGTGAACGCTTTGTTAAGAAAGGTGGAAAAAGAGTGGATCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGAAGAACTGAAGGAAGTTATGGAGAAGGCAAATAGTTTGATAGAGGATATTTTGAAGAAGAAGCCTCGTATGGCTTCTGAGTGTAACAGTAAAAGCTTGGAGAATATTGACACTGAGGGTTTGATATACTTTGAAGGCTTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTTGAAAAGGACTATGAAGATGCAATTTGTAATAAAGGTGAGCTTGATGAGCGGATTTTTGTTAGTGACGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACAATGGGTGGCATCAAGAGGAAGTTTGACTCAGTGTGCTCACCTGCAAGGACAATAACCAGTCCAATGTCTCCACTTCGCTCTCCTGCTTCGCATGCCAATGGCACTCTTAATAGTGGTAATGCAAAACTTGCTGCCACACCTGTTAGCACAGCCATGACAACAGCAAAGTGGCTCAGAACTGTTATTTCCCCACTTCCAGCAAAACCTTCAGCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGGGATGTAACTAATGATGTAGTCCGTAGGGCGCATATTATACTTGAGGCCATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTTACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACTCATAAAACTGTTACAATGTTGTTTCCTGCAGTAATGGAAAGAACTGGCATAACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCTTTGGAAGAACGACTTTTAGAGAGTATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTTGCTAAACCTGCCCTTGCTGCAGAAATTAATCGTCTGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCCATTGCAATTCAAATTAACTTTTCTGGTATGGGGGTATCAACCATGCCTAATCTGCAAAAGCATGAGAGTTTGCCAGGTCAGAATGGGGATATAAGATCGCCCAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCGGTGAAGGACCGACTCATGGCTTTCAGTAGTATTAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGGGGTGGTGGAGAAACGTGTGCTGAAACTGGAATTAACATTTTCTTTAGCAAGATCATCAAGTTGGCTGCTGTAAGAGTCAACGGTATGGTGGAAAGGTTGCAGTTATCTCATCTGATCAGGGAGAATGTCTACTGCCTTTTCCAGCAGATACTCAGTCAAAAGACATCACTATTATTTAACCGTCACATCGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATATACAACTACAGGAAGCAACCGCAATGTAAACCACAAGTCTTCCGCAATGTGTTTGTTGACTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCATGTGGATATAATTACCTTCTACAATGAAATATTTATTCCTTCTGTGAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGATCAACCATGAAAACTGACAGGGTTCCTCAAGTCAACAACAACAGCGATGCACCATGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCGAAAAGCTACTACGCTTGCGTTGGAGAGAGCACCCATGCGTTTCAAAGCCCTTCAAAAGACCTTACTGCCATAAACAACCGTTTGAATGGTACGCGGAAACTCCGAGGCACACTAAATTTTGACGACGCGGACGTTGGTTTAGTAAGTGATTCCCTGGTGGCTAATAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAA 3957 42.89 MMACASQALIAANSCSFPSHRIIRKSQRLFNQSASNLVFTVRASSEDSECNVDECAPDKEVGKISMEWLAGEKTKVVGTYPPTKKGWTGYVEKDTAGQTNIYSVEPVVYVAESAISSGTAGSSSEGAENTLAIAGGMALIAVAAASSILLQVGKKPPEVKTVEYTGPSLSYYINKFNTREIVQQPVQSEPESSSQVDSVAPEVTEIQIQSDIAAPEVTDIQVESQTTEPSSSAVASVSWGSNGKMRVESVKFSTEKAGHWKGFFTGSASAFFAPSAVECCGDFRTMNSLVTPSTVLMESVEETKPSATNSCHTDGGTNTADVQFSGLCQNGLHLDENCCNQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYTMKRLRDKNSESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLVAKELQANFVHLSLLSKYYKRVYREFFSTNDANVEKQSAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHIPVRFRNFSILDCERFVKKGGKRVDLLGSLCNVYDTSEEELKEVMEKANSLIEDILKKKPRMASECNSKSLENIDTEGLIYFEGLMEESSLSSSLEILEKDYEDAICNKGELDERIFVSDEDSLLGSGSLSAGAVTMGGIKRKFDSVCSPARTITSPMSPLRSPASHANGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVMERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAIQINFSGMGVSTMPNLQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLMAFSSIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKIIKLAAVRVNGMVERLQLSHLIRENVYCLFQQILSQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKTDRVPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36260116 36272042 - ClG42_05g0289800.10 Clacu05g2898 250645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2898 1318 CDD CYCLIN_AtRBR_like 1039 1170 - -
Clacu05g2898 1318 MobiDBLite consensus disorder prediction 687 706 - -
Clacu05g2898 1318 SMART DUF3452_2 383 532 IPR024599 -
Clacu05g2898 1318 Gene3D - 493 651 - -
Clacu05g2898 1318 Gene3D - 1000 1192 - -
Clacu05g2898 1318 FunFam Retinoblastoma-related protein 1 989 1199 - -
Clacu05g2898 1318 Pfam Retinoblastoma-associated protein B domain 1039 1166 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Clacu05g2898 1318 Coils Coil 566 590 - -
Clacu05g2898 1318 FunFam Retinoblastoma-related protein 1 493 651 - -
Clacu05g2898 1318 Gene3D - 717 905 - -
Clacu05g2898 1318 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 302 1315 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Clacu05g2898 1318 SUPERFAMILY Cyclin-like 722 917 IPR036915 -
Clacu05g2898 1318 Coils Coil 627 647 - -
Clacu05g2898 1318 MobiDBLite consensus disorder prediction 1181 1196 - -
Clacu05g2898 1318 SMART RB_A_2 714 915 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Clacu05g2898 1318 MobiDBLite consensus disorder prediction 1180 1212 - -
Clacu05g2898 1318 FunFam Retinoblastoma-related protein 1 717 905 - -
Clacu05g2898 1318 SUPERFAMILY Cyclin-like 1037 1206 IPR036915 -
Clacu05g2898 1318 Pfam Domain of unknown function (DUF3452) 394 532 IPR024599 -
Clacu05g2898 1318 Pfam Retinoblastoma-associated protein A domain 714 915 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47815 PF01858 RB_A 1.90E-63 CL0065 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2898 K04681 - csv:101219810 1909.81