Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0005 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGAGGAGGCGGTGGTGCTCGAATCTTAGCCGATTTACCTTACACAAATAACTCCACCACCAACGCCAACAATAACCCCACCGGCGGCATCGGCGTCGGCGGAAATATGTCCTCCGGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCTCTCACCAAATCGATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAGGGGGATTTAGCTGCCCGACTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAAGAAGAACACGAGAGTAGATCTGGGAGTGACAACATGGACGGTGGCTCCGGTGATGACCAGGACGCCGCCGACAACCCTCCGAGGAAGAAACGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTCTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTCGAGTTGAGTCGGAGGCTGTGTTTAGAAACTAGGCAAGTTAAATTTTGGTTCCAAAATCGGAGGACCCAAATGAAGACCCAATTGGAACGCCATGAGAATACTTTACTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAACCCAATCTGTTCGAACTGTGGTGGTCCAGCAATCATCGGCGAAATCTCGCTGGAAGAACAGCAGTTGAGGATTGAAAATGCTCGGCTGAAGGATGAATTGGACCGGGTTTGTGCACTCGCTGGGAAGTTTCTTGGCAGGCCGATTTCGTCGCTGGCTAACTCAATTGCACCTCCATTGCCGAGCTCGAGTCTGGAACTGGGAGTTGGGAGTAATGGATTTGGGAGTTTGACCATGGCGACGTCAATGCCTATTGGGCCTGATTTCGGAGGTGGGTTGTCAGGCAATCTGGCTGTCGTTCAGCCACCTGCGAGGCCAACACCGGGGATGGGACTTGATCGTTCAGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACGGACGAGCCACTTTGGATTGGGAGCTTGGAAGGTGGGAGGGAAATACTGAACCAGGAGGAGTACATGAGGACATTCACTCCTTGCATAGGTATGAAACCAAACGGTTTTGTCACCGAGGCGTCGAGAGAAACTGGCATGGTGATCATCAATAGCTTGGCTCTCGTGGAGACATTGATGGACTCGAATCGATGGGCAGAGATGTTTCCGTGTATGATTGCTCGAACCACGACCACTGATGTGATCTCCAGTGGCATGGGGGGAACGAGGAATGGTGCACTTCAACTGATGCACGCAGAACTTCAAGTGCTCTCACCGTTGGTGCCAGTCCGGGAAGTCAATTTTCTGCGGTTTTGCAAGCAGCACGCCGAAGGTGTATGGGCAGTCGTCGATGTATCGGTCGATACCATGAGAGAGACTCCGACCAGTGGTGGTCCTTCATTTGGCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAACGGGTATTCCAAGGTTACGTGGGTGGAACATGCGGAGTACGATGATAGCCAAGTGCACCAGCTCTACCGTCCCCTACTCAGCTCTGGTATGGGCTTTGGAGCGCAACGGTGGGTTGCCACCCTTCAACGACAATGTGAATGCCTCGCCATCCTCATGTCATCCGCTGTACCAATCCGAGACCACACCGCCATAACCGCAGGTGGGCGGCGGAGCATGCTGAAGCTAGCGCAGCGAATGACAGCGAACTTCTGCGCAGGTGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCTGGGAGCGTAGATGAGGACGTCCGTGTCATGACGCGGAAGAGTGTGGACGATCCTGGGGAGCCTCCGGGTATTGTGTTGAGCGCCGCTACGTCAGTGTGGCTCCCGGTATCTCCCCAACGGCTCTTTGATTTCCTTCGTGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCCCATATTGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTTTTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACATGCATAGACGCGGCGGGATCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCAATGCACGTCGTGATGAACGGTGGCGATTCGGCTTACGTGGCACTTTTACCGTCAGGGTTTGCGATCGTGCCTGACGGGGCGGTGACAGTGACCAATGGGAGCAGTCCAAGTGGCGGGGAGGGTCCACAGAGTCAGAGAGCGACAGGCGGTGGGTCCCTCCTCACCGTCGCATTTCAGATCCTCGTGAATAGCCTCCCTACAGCCAAGCTCACCGTAGAATCGGTTGAAACGGTCAATAATCTCATATCTTGCACCGTCCAGAAAATCAAGGCCGCTCTTCAATGCGAAACCTGA 2511 54.12 MSFGGFLDGGGGGGGGGARILADLPYTNNSTTNANNNPTGGIGVGGNMSSGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVQPPARPTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETPTSGGPSFGNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTVTNGSSPSGGEGPQSQRATGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 307312 312152 - ClG42_06g0000500.10 Clacu06g0005 250653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0005 836 CDD START_ArGLABRA2_like 337 567 - -
Clacu06g0005 836 Gene3D - 121 207 - -
Clacu06g0005 836 SMART START_1 342 568 IPR002913 GO:0008289(InterPro)
Clacu06g0005 836 MobiDBLite consensus disorder prediction 95 114 - -
Clacu06g0005 836 Coils Coil 185 217 - -
Clacu06g0005 836 Pfam Homeodomain 134 189 IPR001356 GO:0003677(InterPro)
Clacu06g0005 836 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Clacu06g0005 836 SUPERFAMILY Bet v1-like 596 829 - -
Clacu06g0005 836 Pfam START domain 342 568 IPR002913 GO:0008289(InterPro)
Clacu06g0005 836 FunFam Homeobox-leucine zipper protein GLABRA 2 342 567 - -
Clacu06g0005 836 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu06g0005 836 CDD homeodomain 133 191 IPR001356 GO:0003677(InterPro)
Clacu06g0005 836 SMART HOX_1 132 195 IPR001356 GO:0003677(InterPro)
Clacu06g0005 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 112 835 IPR042160 -
Clacu06g0005 836 Coils Coil 232 252 - -
Clacu06g0005 836 MobiDBLite consensus disorder prediction 94 141 - -
Clacu06g0005 836 SUPERFAMILY Homeodomain-like 116 191 IPR009057 -
Clacu06g0005 836 FunFam Homeobox-leucine zipper protein HDG1 121 207 - -
Clacu06g0005 836 SUPERFAMILY Bet v1-like 335 568 - -
Clacu06g0005 836 ProSiteProfiles START domain profile. 333 571 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2287 Clacu-Chr1:33849681 Clacu06g0005 Clacu-Chr6:307312 1.70E-191 dispersed
Clacu02g0189 Clacu-Chr2:1769521 Clacu06g0005 Clacu-Chr6:307312 2.10E-208 dispersed
Clacu03g0485 Clacu-Chr3:5170642 Clacu06g0005 Clacu-Chr6:307312 1.20E-187 dispersed
Clacu05g1614 Clacu-Chr5:23368404 Clacu06g0005 Clacu-Chr6:307312 3.50E-78 dispersed
Clacu06g0005 Clacu-Chr6:307312 Clacu07g1314 Clacu-Chr7:27934672 5.00E-150 dispersed
Clacu04g1333 Clacu-Chr4:27193784 Clacu06g0005 Clacu-Chr6:307312 1.00E-188 transposed
Clacu05g1230 Clacu-Chr5:11654153 Clacu06g0005 Clacu-Chr6:307312 1.10E-159 transposed
Clacu09g1169 Clacu-Chr9:11397695 Clacu06g0005 Clacu-Chr6:307312 1.30E-171 transposed
Clacu05g0208 Clacu-Chr5:1846227 Clacu06g0005 Clacu-Chr6:307312 8.90E-268 wgd
Clacu05g0936 Clacu-Chr5:8281525 Clacu06g0005 Clacu-Chr6:307312 3.90E-266 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47816 PF01852 START 2.50E-58 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0005 K09338 - csv:101222248 1559.27