Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0017 ATGGCCGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTCCGCCCACCCATCTCCCTATCAATGACTCTGACTCCTCTCGAATCGACCTTCTTTCCCTTCCTCCTAAGCAGGAGCATCCCGATTCCGACGACTCCAACCTCCCCCCCTCCGGAATTCAGCTCCTCAAGTTCACTGCAGACATTGCTAAATCTGTCTCATCTCTCCCGCCCAAGAGACCGTCTACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGCCGGAGAATCCGAATTCCGGCCACCTGTGCCGCGCGTATCTTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACTATTCGGTGGCTTCTCGAGCGGGCCGAGCCGGCTATCATCGCCGCAACTGGGACTGGTACCATTCCCGCTATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAACCAAGATTCTGCCGATCCATCCGCGGCTAAGAAGCGGCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAACGACGCCCTCTCCGTCTCCGTCTCCGCCTCGAATGGCGTCGTTCAGGCCGGTACCGTTGCCGGTTCCCCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCATCCAACGCCATAATTCCCGGGGCGGTTTTCATGGTACCATCCGTGGCATGTTCTTCCACCCGTCCACAGTTGTTCTCATTTCCGGCTCCGGCGGCGCCGCTCATCAACACGACGGCGCGGCCCATTTCTACCTTCCCGTCGAAGCCAGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCCAGCACTTCAAGCTCCTCCGCTTCCAAGTCTCAATCTGTGATGGCGCCGATCTCGAGCTCTACCGTTCCAACGTCCGGCAAAACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCGTCAATTCATGTCTCGCTCGTCCTCAAAACATTGA 1029 56.95 MADIQKQELDDDDDSPPTHLPINDSDSSRIDLLSLPPKQEHPDSDDSNLPPSGIQLLKFTADIAKSVSSLPPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAAKKRRKRPANSDYVDVNDALSVSVSASNGVVQAGTVAGSPAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAPLINTTARPISTFPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTVPTSGKTTTQMLRDFSLEIYDKEERQFMSRSSSKH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 412937 413965 + ClG42_06g0001700.10 Clacu06g0017 250665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0017 342 MobiDBLite consensus disorder prediction 67 88 - -
Clacu06g0017 342 MobiDBLite consensus disorder prediction 151 178 - -
Clacu06g0017 342 MobiDBLite consensus disorder prediction 164 178 - -
Clacu06g0017 342 MobiDBLite consensus disorder prediction 1 52 - -
Clacu06g0017 342 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 53 294 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Clacu06g0017 342 MobiDBLite consensus disorder prediction 263 315 - -
Clacu06g0017 342 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Clacu06g0017 342 MobiDBLite consensus disorder prediction 1 19 - -
Clacu06g0017 342 MobiDBLite consensus disorder prediction 74 88 - -
Clacu06g0017 342 Pfam TCP family transcription factor 76 172 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0017 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2640 Clacu-Chr5:34054604 Clacu06g0017 Clacu-Chr6:412937 2.30E-27 dispersed
Clacu06g0017 Clacu-Chr6:412937 Clacu06g1733 Clacu-Chr6:27941806 8.80E-29 dispersed
Clacu05g0912 Clacu-Chr5:8086218 Clacu06g0017 Clacu-Chr6:412937 1.70E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu01g0823 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.1e-68 255.0
Clacu02g1453 . 37 247 TCP Transcription Factor Family AT5G23280 59.9 5.6e-57 218.0
Clacu06g0017 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.5e-66 250.4
Clacu05g2640 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.4e-41 165.2
Clacu04g1303 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Clacu11g1530 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Clacu11g1530 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Clacu05g1532 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Clacu01g0823 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.6e-63 237.3
Clacu02g1453 . 9 247 TCP Transcription Factor Family AT5G08330 55.8 8.0e-61 230.7
Clacu11g1530 . 147 384 TCP Transcription Factor Family AT1G35560 50.4 1.4e-42 170.6
Clacu07g1656 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47818 PF03634 TCP 6.50E-30 No_clan Clacu TF