Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0019 ATGGAGGAAAATGAAAGGAAAAGTGAAGCTGAAACCAAATTCGATGGTATATTTGGAATCCACATCCCAATAATTCTTCCTCAATTTTTCTTCCCTTCTTTTTCAAGTTTCAGCGAAGATTCACTCCATTCTCTTCCGTCATCAATCAATCTCTCAATAAGTTTGCAACTTTCGGTTATGGATAATTACGGCTCTTCACCTTCGTATCCATACCACAATCCTTACGCATACCCTCGTCCAGTTGCTCCTCAATACCCACCTCCTTCTCAATATCCTCCTCCTTCTCAATATCCTCCTCCTCCTCATTATACACATCCAAATTCAGATCCCTATGCTCGTCCTGCTTACCCTTATCCCTATAATCCTTCACATGCCTCTCCATTTGCATATCCCCCACCCCCATCTCATTCTGGCCTAGTAGAGTATTTTCCACACCCACCTGCACATTCTAGCCCTCTACCTTACCCATATCCTTACTCTGATGCCTCATCTACTGGTGGTGCTAGACCATCCATTCAATATCATAACAATTTCCAACCTGGTTCATCCCCATATCGGTATCAAGAATCTAATACATACCCTCCACCAGAAAGTCAATACCCACCACCCCCTTCACGAGTAAATAGCTTCTCTGGCCACTATAGGAACGATAGCACTGATTCTGCATCATCTGTCTCTTCTGCATACCCGCCTCTGGATGACCTTTTGTGCAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCTGCAGCACCTGCACCTGCACCTGCACAGCCTTCAGCTTCGTTATTGGCAAATTCACCTCAAAGTGCGAGATATGATCGGCGTGACCGATTTTATGGCTTTCCGAATTCATCCTTTTCTAGTTTTGACACGGGGAATTCAGATCAAATGGTTACATCCAAACAACCTTCATTTTCCCATTCAAGCTCATTCAGTGGGTCTCAACATAGTCAGAACTTGCAGATTGTTCCCTTGCATAGTAAAGCATCATTGAGAGTTTTGCTGTTGCATGGAAACTTAGAAATATGGGTTAATGAGGCCAAAAATCTTCCAAATATGGACATGTTTCACAAAACCTTAGGGGATATGTTTGCAAAATTACCTGGGAACATGAGCAACAAAATTGAAGGACGCGTGAGTCATAAGATCACTAGTGATCCTTATGTATCGATCAATGTAGCAAATGCAGTAATTGGGAGGACTTTTGTTATAAGCAACAATGAAAATCCTGTATGGAGGCAACATTTCTATGTTCCTGTTGCACATTATGCTGCTGAAGTAGTTTTTGTCGTTAAAGACAGTGATGTTGTTGGTTCACAGCTGATAGGAACGGTAGCAATTCCTGCAGAACAAATATATTCAGGGTCTATGGTTGAAGGAACCTTCCCAATCCTACTTGGTGGGAAGCCATGTAAACCTGGAGCAGCTCTAAGTATTTCTATTCAGTATACCCCAATGGAGAGGCTTAGCACTTATCATCATGGAGTGGGAGCTGGCCCTGATTATCAGGGGGTTCCTGATACATATTTCCCCCTCAGAAAGGGTGGAGCTGTCACTCTTTATCAAGATGCCCATGTTCCAGATGGGCACCTTCCAAATTTGATGCTTGATAATGGTATGTACTATGTACATGGGAAGTGTTGGCATGACATCTTTGATGCTGTACGTCAGGCTCGCAGGTTAATTTACATAACTGGGTGGTCGGTGTGGCACAAAGTGAAACTAGTTCGAGATACTAGCTATGGGACAGAGTGTACCCTTGGAGATCTGCTGAGGTCAAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGTTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGTTTTTTCAAACACTCCTCTGTACAAGTGATACTTTGTCCTCGGATTGCTGGAAAACGACATAGTTGGGTTAAGCAAAAGGAAGTTGGAACTATATATACACACCATCAGAAAACAGTTATTGTGGATGCTGATGCTGGAAATAATAGAAGAAAGATCATAGCTTTTGTTGGAGGGCTTGATTTATGTGATGGGCGGTATGATACTCCATTACATCCCATATTTCGGACCCTTCAAACAGTACACAAGGATGATTACCACAATCCTACATACACGGGTAGCGTTGTTGGTTGTCCAAGAGAACCATGGCATGATCTACACAGCAAAATTGATGGTCCAGCTGCATATGATGTTTTGACTAACTTTGAGGAGCGATGGAGGAGAGCTTCAAAACCTCACGGGATAAAGAAGTTGAAATCATATGATGATGCTTTGCTGAGTATTGAAAGAATTCATGACATAATTGGAATTTCTGAAGCGCACTGCACTAATGAAAATGACCCAGAATCATGGCATGTCCAGATTTTTCGCTCAATTGATTCAACTTCTGTTAAAGATTTCCCAAAGGATCCAAAAGATGCCCCAAGCAAGAACCTCGTATGTGGAAAGAATGTGCTGATTGATATGAGTATACACACAGCATATGTGAAAGCCATTCGAGCTGCCCAACATTACATTTATATAGAGAACCAATATTTCATTGGATCATCCTTCAATTGGAATTCTAATAAAGATATAGGTGCCAACAATTTGATTCCGATGGAAATTGCGCTAAAGATTGCTGATAAAATAAGAGCAAATGAGAGGTTTGCTGCATACATTGTCATCCCCATGTGGCCTGAGGGTGTTCCAACCGCTGCTGCCACTCAGAGAATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCGTTTACAAGGCTTTGATGGAGGTTGGTCTTGAGGATGCATTCTCTCCACAAGACTATTTGAACTTCTTCTGTCTGGGAAATCGTGAGGCTATGGATGGAAATGATCCTTCATGTTCTGGAAGTCCTAATGCAGAAAACACCCCTCAGGCACTTAGTCGGAAAAGCAGAAGGTTTATGATATATGTTCACTCCAAAGGCATGATAGTTGACGACGAGTATGTGATTTTGGGATCTGCCAACATCAACCAGAGATCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCATTATACGTGGGCAAGGAAACTTTCACATCCTCGTGGACAGATCTATGGATATAGGATGTCATTGTGGGCGGAGCATACGGGAACTACCGAGGAGTGTTTCAACCACCCAGAGAGCCTGGAATGTGTCAAAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGATGTAACAGAGATGAAAGGACACCTACTGAAGTACCCCGTCGAAGTCGATAGAAGAGGAAGAGTAAGATCACTTCCTGGTCATGAAAATTTTCCAGATGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGCATTCAGGAGAACCTCACTATATAA 3474 42.57 MEENERKSEAETKFDGIFGIHIPIILPQFFFPSFSSFSEDSLHSLPSSINLSISLQLSVMDNYGSSPSYPYHNPYAYPRPVAPQYPPPSQYPPPSQYPPPPHYTHPNSDPYARPAYPYPYNPSHASPFAYPPPPSHSGLVEYFPHPPAHSSPLPYPYPYSDASSTGGARPSIQYHNNFQPGSSPYRYQESNTYPPPESQYPPPPSRVNSFSGHYRNDSTDSASSVSSAYPPLDDLLCNVHLSDHQPTAPASPPAPAAAPAPAPAQPSASLLANSPQSARYDRRDRFYGFPNSSFSSFDTGNSDQMVTSKQPSFSHSSSFSGSQHSQNLQIVPLHSKASLRVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKIEGRVSHKITSDPYVSINVANAVIGRTFVISNNENPVWRQHFYVPVAHYAAEVVFVVKDSDVVGSQLIGTVAIPAEQIYSGSMVEGTFPILLGGKPCKPGAALSISIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMYYVHGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTSYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVQVILCPRIAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPLHPIFRTLQTVHKDDYHNPTYTGSVVGCPREPWHDLHSKIDGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLSIERIHDIIGISEAHCTNENDPESWHVQIFRSIDSTSVKDFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRANERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVVYKALMEVGLEDAFSPQDYLNFFCLGNREAMDGNDPSCSGSPNAENTPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARKLSHPRGQIYGYRMSLWAEHTGTTEECFNHPESLECVKRVRTMGELNWKQFAADDVTEMKGHLLKYPVEVDRRGRVRSLPGHENFPDVGGKIVGSFLGIQENLTI 1157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 419311 429455 - ClG42_06g0001900.10 Clacu06g0019 250667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0019 1157 ProSiteProfiles C2 domain profile. 324 470 IPR000008 -
Clacu06g0019 1157 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 670 705 IPR001736 GO:0003824(InterPro)
Clacu06g0019 1157 Pfam C2 domain 346 471 IPR000008 -
Clacu06g0019 1157 MobiDBLite consensus disorder prediction 242 277 - -
Clacu06g0019 1157 SMART C2_3c 347 469 IPR000008 -
Clacu06g0019 1157 MobiDBLite consensus disorder prediction 248 262 - -
Clacu06g0019 1157 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 344 493 IPR035892 -
Clacu06g0019 1157 SMART pld_4 1003 1030 IPR001736 GO:0003824(InterPro)
Clacu06g0019 1157 SMART pld_4 670 705 IPR001736 GO:0003824(InterPro)
Clacu06g0019 1157 MobiDBLite consensus disorder prediction 154 227 - -
Clacu06g0019 1157 CDD C2_plant_PLD 341 492 - -
Clacu06g0019 1157 MobiDBLite consensus disorder prediction 164 194 - -
Clacu06g0019 1157 MobiDBLite consensus disorder prediction 298 321 - -
Clacu06g0019 1157 PANTHER PHOSPHOLIPASE D 343 1145 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Clacu06g0019 1157 Gene3D Endonuclease Chain A 548 784 - -
Clacu06g0019 1157 FunFam Phospholipase D delta 546 783 - -
Clacu06g0019 1157 SUPERFAMILY Phospholipase D/nuclease 511 770 - -
Clacu06g0019 1157 MobiDBLite consensus disorder prediction 204 227 - -
Clacu06g0019 1157 Gene3D C2 domain 341 484 IPR035892 -
Clacu06g0019 1157 Pfam Phospholipase D C terminal 1077 1147 IPR024632 -
Clacu06g0019 1157 FunFam Phospholipase D 817 1049 - -
Clacu06g0019 1157 Gene3D Endonuclease Chain A 817 1053 - -
Clacu06g0019 1157 MobiDBLite consensus disorder prediction 82 116 - -
Clacu06g0019 1157 Pfam Phospholipase D Active site motif 672 705 IPR001736 GO:0003824(InterPro)
Clacu06g0019 1157 Pfam Phospholipase D Active site motif 1005 1030 IPR001736 GO:0003824(InterPro)
Clacu06g0019 1157 SUPERFAMILY Phospholipase D/nuclease 829 1089 - -
Clacu06g0019 1157 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1003 1030 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2129 Clacu-Chr1:32931600 Clacu06g0019 Clacu-Chr6:419311 1.90E-262 dispersed
Clacu06g0019 Clacu-Chr6:419311 Clacu10g0341 Clacu-Chr10:4306257 0.00E+00 dispersed
Clacu06g0019 Clacu-Chr6:419311 Clacu08g1564 Clacu-Chr8:25477023 6.00E-271 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0019 K01115 - csv:101218942 1987.23