Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0023 ATGGTGAGAGGAAAGACGCAGATGAGGCTAATAGAGAACGCCACAAGCCGACAAGTCACCTTCTCCAAGAGGCGAAATGGTTTGATGAAAAAAGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAAGTTGCTCTTATTATTTTCTCCCCTAGAGGAAAGCTTTACGAATTTGCTAGCTCAAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCATGCAAAAACCAAGGATGCCCAGGATCCTCCATCTGTTAATAATGTTGTACAGTTGGAGCATCTGAATCATGAAGAAGCAGCTAGCCTGATGAAGAAAATAGAGCAACTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATGGATGAACTTCAACAACTTGAAAATCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGATTGAAGTGTTTGAAGAACAGATTAAACAACTAAGGCAAAAGGAGAAAGTCTTGCAAGATGAAAATGCTAAGCTACTTCAAAAGTGGGAAAGTGAGGGAGATGGAGGAGTAAATAATGAAGGAGAAAGAGGAGAGAAATTGTTAAACTATGCAGAAAGTAGCAGCCCAAGTTCTGAGGTGGAGACGGAATTGTTCATTGGGCCACCCGAAGCAAGGCCCAGAAGATTTCTTTCCCTTCACTGA 681 41.85 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATIERYRKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDLGSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGDGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 466375 477458 - ClG42_06g0002300.10 Clacu06g0023 250671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0023 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0023 226 Coils Coil 98 118 - -
Clacu06g0023 226 FunFam MADS-box transcription factor 1 13 83 - -
Clacu06g0023 226 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0023 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0023 226 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0023 226 Coils Coil 128 174 - -
Clacu06g0023 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu06g0023 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0023 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0023 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0023 226 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu06g0023 226 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0023 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0023 226 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu06g0023 226 Pfam K-box region 94 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0328 Clacu-Chr1:3259190 Clacu06g0023 Clacu-Chr6:466375 5.70E-52 dispersed
Clacu01g0543 Clacu-Chr1:5438381 Clacu06g0023 Clacu-Chr6:466375 1.40E-45 dispersed
Clacu05g0226 Clacu-Chr5:1987508 Clacu06g0023 Clacu-Chr6:466375 3.60E-50 dispersed
Clacu05g0909 Clacu-Chr5:8046292 Clacu06g0023 Clacu-Chr6:466375 2.30E-45 dispersed
Clacu06g0023 Clacu-Chr6:466375 Clacu06g0213 Clacu-Chr6:2427328 6.00E-34 dispersed
Clacu06g0022 Clacu-Chr6:460263 Clacu06g0023 Clacu-Chr6:466375 9.10E-36 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47820 PF01486 K-box 1.70E-25 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0023 - - - 0.0