Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0033 ATGGATGGAATTACACCCCACAATCGCCCTCTTCCTCCTCCTTTCCTTTCCAAAGATCTCCATCTCCACCATGGATTATTCCACCACCACCAAAACTCCGACGACGACCAAACCGCCGGAGCTAAGAGAGATAGAGAGGACGAAAACCCCACCACGGCGGCGATGGCGGACAGCAAAGAATTATCTAATTCTTCATCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATTACTAGAGACAGCGCTAACGCCCTCAGATCTCATCTCATCGAAATCTCCACTGCCTCCGACATCGTAGATTCCCTCGCTGCCTTCGCACGCCGCCGCCAGCGTGGCGTTTGTATTCTAAGTGCCACGGGTACCGTCGCCAACGTCACTCTCCGGCAGCCGGCCTCCCCCGGCGCTGTCATCACCTTACATGGGAGATTTGAAATTCTCTCCCTCTCCGGCTCTTTCCTCCCACCGCCGGCTCCCCCGGCCGCCTCTGGTCTGACCGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTCGGTGGGAATGTAATCGGCCCACTTTCGGCGTCCGGTCCGGTGATTATCATGGCGGCTTCTTTTGGTAATGCTGCGTATGAACGGCTACCCATTGATGACGACGACGAAACGTCACCGGCAGCAGAGATTGCCGGACAACAAGCAGCACCGCCGCCGCCACAATTGATGGGGGATCCTAATGGGGGATTGTTTCATGGGATGGCGCAGAATGTTGTGAATTCTTCATGCCAATTGCCGGCAGAGGCGGCGGCGGCGTTTTGGGGAGGAGGTCGGCCACCGTATTGA 840 57.14 MDGITPHNRPLPPPFLSKDLHLHHGLFHHHQNSDDDQTAGAKRDREDENPTTAAMADSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDSLAAFARRRQRGVCILSATGTVANVTLRQPASPGAVITLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLSASGPVIIMAASFGNAAYERLPIDDDDETSPAAEIAGQQAAPPPPQLMGDPNGGLFHGMAQNVVNSSCQLPAEAAAAFWGGGRPPY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 547548 548387 - ClG42_06g0003300.10 Clacu06g0033 250681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0033 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 240 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Clacu06g0033 279 MobiDBLite consensus disorder prediction 55 71 - -
Clacu06g0033 279 FunFam AT-hook motif nuclear-localized protein 94 221 - -
Clacu06g0033 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 206 IPR005175 -
Clacu06g0033 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 218 - -
Clacu06g0033 279 CDD DUF296 95 206 IPR005175 -
Clacu06g0033 279 ProSiteProfiles PPC domain profile profile. 91 231 IPR005175 -
Clacu06g0033 279 Gene3D - 94 224 - -
Clacu06g0033 279 MobiDBLite consensus disorder prediction 216 244 - -
Clacu06g0033 279 MobiDBLite consensus disorder prediction 28 53 - -
Clacu06g0033 279 MobiDBLite consensus disorder prediction 28 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0356 Clacu-Chr1:3547641 Clacu06g0033 Clacu-Chr6:547548 9.40E-75 dispersed
Clacu06g0033 Clacu-Chr6:547548 Clacu09g1220 Clacu-Chr9:12287147 4.60E-60 dispersed
Clacu02g0323 Clacu-Chr2:2942137 Clacu06g0033 Clacu-Chr6:547548 8.30E-59 transposed
Clacu05g0249 Clacu-Chr5:2167340 Clacu06g0033 Clacu-Chr6:547548 5.50E-66 wgd
Clacu05g0882 Clacu-Chr5:7714172 Clacu06g0033 Clacu-Chr6:547548 2.00E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0033 - - - 0.0