Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0035 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGTGGGCCGGGAACTGCCAGCGCCGGCGGTGGCGTCGGTGGCGGCGGAGGGGGGCCATGTGGAGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCCCCTTATTTCGACTCCGAGCAAGGCGCAGCCCATTTCGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAACGTCTCGAAGCTCCTCCTTCATATTCCGGTCCACAAACGTCTCGATGCTGTCGTCACGATTTGTTACGAGGCTCAAGCACGCCTCCGAGACCCTGTCTACGGTTGCGTCGCTCACATCTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACTTACCTTCAAGCCCATCTAGCAACACTGGAGCTTCCGTCCCCGCCGAACCCGCCGCCGCCACCTCCGCCACCAAGTTTTCCGGCGCAACCGCCGCTTTCCATCTCAGACCTGCCGTCGGCCTCCTCCCTGCCGGCCACTTACGACTTGTCGTCCCTCTTCGATCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCCCCGCCAGTTCGCCGGCGGAGGTGGCGGTTCATCAACGGCGGCAGGAGAAGGCGATCTTCAAGCCCTGGCTCGCGAACTCCTTCATAGACACGGCGCTCTGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCTAAATGA 723 61.13 MSANPSTSGGGGPGTASAGGGVGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDPRQFAGGGGGSSTAAGEGDLQALARELLHRHGALPCSDASSPQSLSK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 567627 570535 - ClG42_06g0003500.10 Clacu06g0035 250683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0035 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 26 147 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Clacu06g0035 240 MobiDBLite consensus disorder prediction 135 155 - -
Clacu06g0035 240 Pfam Lateral organ boundaries (LOB) domain 29 127 IPR004883 -
Clacu06g0035 240 MobiDBLite consensus disorder prediction 185 219 - -
Clacu06g0035 240 MobiDBLite consensus disorder prediction 134 158 - -
Clacu06g0035 240 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0035 Clacu-Chr6:567627 Clacu07g0083 Clacu-Chr7:1242345 7.50E-43 dispersed
Clacu06g0035 Clacu-Chr6:567627 Clacu06g0036 Clacu-Chr6:585369 7.80E-40 tandem
Clacu07g0337 Clacu-Chr7:3837492 Clacu06g0035 Clacu-Chr6:567627 1.10E-35 transposed
Clacu09g0797 Clacu-Chr9:7180340 Clacu06g0035 Clacu-Chr6:567627 5.10E-39 transposed
Clacu10g1569 Clacu-Chr10:28966015 Clacu06g0035 Clacu-Chr6:567627 2.70E-37 transposed
Clacu05g0254 Clacu-Chr5:2205438 Clacu06g0035 Clacu-Chr6:567627 4.10E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47821 PF03195 LOB 2.70E-38 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0035 K21994 - csv:101220603 378.637