Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0036 ATGACCCACACCCACACACCAATTGGCCTACATCAAGAGGCCCTGATGAGTGGCGGCGGCGGCGGCGGCCAAGGCGGAGGGCCTTGCGGCGCGTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGGTGCATTTTTGCACCCTATTTCGACTCCGAGCAAGGCGCCGCCCACTTTGCCGCCGTGCATAAGGTGTTCGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCGCCTCCCAAGCGTCTCGACGCTTGCGTTACTCTTTGTTACGAGGCTCTTGCTAGGGTTCGAGATCCTGTCTATGGTTGTGTTGCTCAAATTTTCACCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTGCCACCTTGCAGCGGCTGTTTCCGCCACCGTTACAGGACGCATCACTGCCCACTCGCGACAGCCTGCTCCCGGAAACGATACCGGGCTCCGACATGGGTTTGATGTCCAACGTTCCAATGCTCCTTGATCCCCTCCAAACGCAGCTAGGTTATAACGAAATGACAAATAATTTTCCGAACCCAATTTATCATCAAGATCAGATGGATGAAGACGGTGATCTTCAGTCTTTGGCTCGAGAATTGGTTTCGAGGTACTTGCCCGAAGTACGACAGCGGCCGCCGTGCTCACAGATTTAA 684 53.95 MTHTHTPIGLHQEALMSGGGGGGQGGGPCGACKFLRRKCVKGCIFAPYFDSEQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVAQIFTLQQQVVNLQAELAYIQAKLATLQRLFPPPLQDASLPTRDSLLPETIPGSDMGLMSNVPMLLDPLQTQLGYNEMTNNFPNPIYHQDQMDEDGDLQSLARELVSRYLPEVRQRPPCSQI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 585369 588818 + ClG42_06g0003600.10 Clacu06g0036 250684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0036 227 PANTHER LOB DOMAIN CONTAINING PROTEIN 24 143 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Clacu06g0036 227 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
Clacu06g0036 227 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
Clacu06g0036 227 Coils Coil 115 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0036 Clacu-Chr6:585369 Clacu07g0084 Clacu-Chr7:1254424 1.00E-33 dispersed
Clacu06g0035 Clacu-Chr6:567627 Clacu06g0036 Clacu-Chr6:585369 7.80E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47822 PF03195 LOB 2.80E-36 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0036 - - - 0.0