Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu06g0047 | ATGAGGAGGGACGAAAGGCAGGAGGTCGTTGCGCGCTCCCGTATCGGCCCCAACATCCATCGCTTTGCCCAGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCGTCGCCTTCACTCTCAGGTCCCAATTTGCTGGTTTGTAATCCATTTTGTTTCGATCTCTGTCTGGTGCCCTTCGTTCAATCTCGCAGGAGTCTTTCGCGAGGTGCTTGTTATGTATTTTCCTATTCGTTTTGCCTGTACCCAATTTTGTGCTTTAAAAGACTAGAAGCATGGCTATGTGTTTCCTTTGAGATGGGGAGGAAGTGGAAGCTTTTCTTTCAGAGGCCTATCTATGAAAGGGAAATTGGGGGATTAACCAACCTCATCATCCTTTTGGAGAAGCAGAAAACAAGTAACCTTTCTAATCAACAACTATGGGCACTACATCTGTCTGGAATCTCACTGACAGTTTGGTCTTCCATAACGAAGAGGTTTCAGCCATTGAAGGCTTCTAAGAGCCAATCCTCGATCATATCTGGACGGCGTACACAAAAAACCAAACACTCTATGGACAGTCAAATGGATGGACCAACTGGTCGCAGTGGCGGTGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGAAAGATAAAAAACTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGACTGTTCATGCATCCGCACATTATACGGCTCTATGAGGTTATAGAGACCCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATTATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTCTTGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCGGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCAAGCATGCTGGTGGTTGACCCAATGAAACGCATCACGATCCCTGAGATTCGGCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGTATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCATATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGTCTTCCTGGGTATATGGATTACCAAGGAATGGGCTTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCCCTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACTGAAGTTCTTAAAGCCCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTATAATATGAAATGTAGATGGTTGCCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAACCCTGTGCATAGTAATCATTACTTTGGGGACGAGTCTACCATCATTGAAAACGATGGCGTTGTAAAATCGCCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCTTTCCTTGCCCAGCTCCGAAATCTTAGTTCCTCTTCCCCTTCCCTCTTTAGATGGATAGTTCAATCTTGTGTAAATCTGATTTTCGGTAGTAGAAGTTGTCGATCTCGGTGTCCAATATTGATTGGTGATGCCCTTGCTCCTTGGCTGTCGTTTTCTTGTCGTCAAGATTCCCGAAATCCTTTCCTCTTTGAACTCGCAAAGATGACTCAAGACGCCGAGATGAAAGAGCTTCCTGCTCCATTGTCGTCTTCTTCCTCTTCAGCTTCCCCCTCAACTCTACAACATTTGAAAGAGATTGTGTCGCTCATTGAGACCGGTGCCTATGCTCGGGAGGTTCGGCGGATTGTTCGTGCCATTCGTCTGACTATGGCGTTGAGGCGGAAGTTGAAGGCTTCTGTCGTTTCTCAATTTCTGAATCTTGTTCTCCCCCCAGGGTCCGAGGTGCACACTAGGTTATCGTCATTTCTTCCAAAGGAGGATGACTGTGAAATGGATGTTGACACGGCAACACAAGCTCCTGCGAAACACCCTTTGCCCGAGATAGAGATATTTTGCTACTTGATTGTGCTAATATTTTTGATTGATCAGAAGAAATATGCTGATGCTAAAGCTTGCGCCTCCGCAAGCATTGCTCGGGTTAAGAACCTTAATAGGAGAACAGTCGATGTTTTAGCATCCAGGCTCTACTTCTATTATTCCCTCAGCTATGAACTCACTGGCGATCTTGCTGAAATAAGGGGCAACCTCCTAGCCCTGCATCGCATTGCAACCTTGCGCCATGATGAATTGGGTCAGGAAACCCTCCTTAACCTTCTACTTCGTAATTACCTCCACTACAACCTTTATGATCAAGCTGAGAAGTTGAGGTCCAAGGCACCCCGGTTTGAAGCTCACTCAAATCAGCAGTTCTGTAGATACCTATTTTACCTTGGCAAGATCAGGACCATTCAGCTGGAGTACACAGATGCAAAGGAGTCTCTTCTACAAGCTGCTCGGAAAGCACCCATTGCAGCCCTTGGTTTTCGAGTGCAATGCAACAAATGGGCAATCATTGTTCGCTTGCTGCTAGGAGAAATCCCTGAGAGGACCGTTTTCATGCAGAAAGGCATGGAGACAGCTCTGAGGCCATACTTTGAACTTACAAATGCTGTGAGAATTGGTGACTTGGAGCTTTTCAGGACAGTTGCCGAGAAGTTCTCTGGCACTTTCAGCTCAGATCGAACTAACAACTTGATCGTGAGGCTGCGACACAATGTCATTAGGACTGGGCTTCGCAACATTAGCATTTCTTATTCACGAATTTCTCTGGTTGATGTTGCTAAAAAGCTTAGGTTGGACTCAGCAAATCCTGTTGCTGATGCTGAGAGCATCGTCTCCAAGGCAATCCGAGATGGAGCAATTGATGCAACAGTCGATCATGGGAAGGGATGGATGGTATCAAAGGAGACTGGTGATATTTACTCTACCAATGAACCTCAGCTTGCTTTCAACTCGAGGATTGCGTTTTGCCTGAATATGCATAATGAGGCAGTTCGTGCCCTTCGGTTTCCACCAAATTCACACAAGGAAAAAGAAAGCGCCGAGAAAAGAAGAGAAAGACAACAGCAGGAGCAAGAACTTGCAAAACACATAGCCGAAGAAGATGATGACGACTTTTAG | 3771 | 45.16 | MRRDERQEVVARSRIGPNIHRFAQLPSPFTPNQHSPLSSSDLHSPSPSLSGPNLLVCNPFCFDLCLVPFVQSRRSLSRGACYVFSYSFCLYPILCFKRLEAWLCVSFEMGRKWKLFFQRPIYEREIGGLTNLIILLEKQKTSNLSNQQLWALHLSGISLTVWSSITKRFQPLKASKSQSSIISGRRTQKTKHSMDSQMDGPTGRSGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNHMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRNLSSSSPSLFRWIVQSCVNLIFGSRSCRSRCPILIGDALAPWLSFSCRQDSRNPFLFELAKMTQDAEMKELPAPLSSSSSSASPSTLQHLKEIVSLIETGAYAREVRRIVRAIRLTMALRRKLKASVVSQFLNLVLPPGSEVHTRLSSFLPKEDDCEMDVDTATQAPAKHPLPEIEIFCYLIVLIFLIDQKKYADAKACASASIARVKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVAEKFSGTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHGKGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF | 1256 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 642745 | 657394 | - | ClG42_06g0004700.10 | Clacu06g0047 | 250695 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu06g0047 | 1256 | Coils | Coil | 1223 | 1250 | - | - | |
Clacu06g0047 | 1256 | FunFam | Non-specific serine/threonine protein kinase | 592 | 710 | - | - | |
Clacu06g0047 | 1256 | SMART | uba_6 | 491 | 528 | IPR015940 | - | |
Clacu06g0047 | 1256 | MobiDBLite | consensus disorder prediction | 1220 | 1249 | - | - | |
Clacu06g0047 | 1256 | SUPERFAMILY | KA1-like | 525 | 711 | IPR028375 | - | |
Clacu06g0047 | 1256 | Pfam | Proteasome regulatory subunit C-terminal | 1189 | 1255 | IPR013586 | GO:0000502(InterPro)|GO:0030234(InterPro)|GO:0042176(InterPro) | |
Clacu06g0047 | 1256 | SUPERFAMILY | Winged helix DNA-binding domain | 1116 | 1190 | IPR036390 | - | |
Clacu06g0047 | 1256 | FunFam | 26S proteasome non-ATPase regulatory subunit 3 | 889 | 1212 | - | - | |
Clacu06g0047 | 1256 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 1114 | 1207 | IPR000717 | - | |
Clacu06g0047 | 1256 | Gene3D | Transferase(Phosphotransferase) domain 1 | 209 | 547 | - | - | |
Clacu06g0047 | 1256 | FunFam | Non-specific serine/threonine protein kinase | 207 | 546 | - | - | |
Clacu06g0047 | 1256 | SMART | serkin_6 | 216 | 468 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu06g0047 | 1256 | SMART | PCI/PINT associated module | 943 | 1114 | - | - | |
Clacu06g0047 | 1256 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 335 | 347 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu06g0047 | 1256 | Pfam | Kinase associated domain 1 | 669 | 710 | IPR001772 | - | |
Clacu06g0047 | 1256 | ProSiteProfiles | PCI domain profile. | 1008 | 1189 | IPR000717 | - | |
Clacu06g0047 | 1256 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 489 | 529 | IPR015940 | - | |
Clacu06g0047 | 1256 | ProSitePatterns | Protein kinases ATP-binding region signature. | 222 | 245 | IPR017441 | GO:0005524(InterPro) | |
Clacu06g0047 | 1256 | MobiDBLite | consensus disorder prediction | 177 | 208 | - | - | |
Clacu06g0047 | 1256 | PANTHER | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 | 772 | 1252 | IPR050756 | GO:0006511(PANTHER)|GO:0008541(PANTHER) | |
Clacu06g0047 | 1256 | ProSiteProfiles | Protein kinase domain profile. | 216 | 468 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu06g0047 | 1256 | Gene3D | - | 1023 | 1208 | - | - | |
Clacu06g0047 | 1256 | ProSiteProfiles | Kinase associated domain 1 (KA1) profile. | 663 | 711 | IPR001772 | - | |
Clacu06g0047 | 1256 | CDD | AMPKA_C | 586 | 709 | - | - | |
Clacu06g0047 | 1256 | MobiDBLite | consensus disorder prediction | 1220 | 1256 | - | - | |
Clacu06g0047 | 1256 | Gene3D | Kinase associated domain 1, KA1 | 592 | 711 | - | - | |
Clacu06g0047 | 1256 | CDD | UBA_SnRK1_plant | 490 | 530 | - | - | |
Clacu06g0047 | 1256 | FunFam | Non-specific serine/threonine protein kinase | 206 | 295 | - | - | |
Clacu06g0047 | 1256 | CDD | STKc_AMPK_alpha | 213 | 468 | - | - | |
Clacu06g0047 | 1256 | SUPERFAMILY | Protein kinase-like (PK-like) | 213 | 486 | IPR011009 | - | |
Clacu06g0047 | 1256 | Pfam | Protein kinase domain | 216 | 468 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu06g0047 | 1256 | Pfam | UBA/TS-N domain | 490 | 526 | IPR015940 | - | |
Clacu06g0047 | 1256 | Pfam | PCI domain | 1106 | 1185 | IPR000717 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g0426 | Clacu-Chr2:3846266 | Clacu06g0047 | Clacu-Chr6:642745 | 1.20E-252 | dispersed | |
Clacu02g2166 | Clacu-Chr2:34801422 | Clacu06g0047 | Clacu-Chr6:642745 | 8.80E-39 | dispersed | |
Clacu06g0047 | Clacu-Chr6:642745 | Clacu11g0201 | Clacu-Chr11:1722123 | 3.40E-195 | dispersed | |
Clacu06g0047 | Clacu-Chr6:642745 | Clacu02g2460 | Clacu-Chr2:37542285 | 5.60E-73 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73613 | PF00069 | Pkinase | 1.50E-79 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu06g0047 | K07198 | - | csv:101211720 | 1009.59 |