Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0047 ATGAGGAGGGACGAAAGGCAGGAGGTCGTTGCGCGCTCCCGTATCGGCCCCAACATCCATCGCTTTGCCCAGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCGTCGCCTTCACTCTCAGGTCCCAATTTGCTGGTTTGTAATCCATTTTGTTTCGATCTCTGTCTGGTGCCCTTCGTTCAATCTCGCAGGAGTCTTTCGCGAGGTGCTTGTTATGTATTTTCCTATTCGTTTTGCCTGTACCCAATTTTGTGCTTTAAAAGACTAGAAGCATGGCTATGTGTTTCCTTTGAGATGGGGAGGAAGTGGAAGCTTTTCTTTCAGAGGCCTATCTATGAAAGGGAAATTGGGGGATTAACCAACCTCATCATCCTTTTGGAGAAGCAGAAAACAAGTAACCTTTCTAATCAACAACTATGGGCACTACATCTGTCTGGAATCTCACTGACAGTTTGGTCTTCCATAACGAAGAGGTTTCAGCCATTGAAGGCTTCTAAGAGCCAATCCTCGATCATATCTGGACGGCGTACACAAAAAACCAAACACTCTATGGACAGTCAAATGGATGGACCAACTGGTCGCAGTGGCGGTGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGAAAGATAAAAAACTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGACTGTTCATGCATCCGCACATTATACGGCTCTATGAGGTTATAGAGACCCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATTATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTCTTGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCGGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCAAGCATGCTGGTGGTTGACCCAATGAAACGCATCACGATCCCTGAGATTCGGCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGTATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCATATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGTCTTCCTGGGTATATGGATTACCAAGGAATGGGCTTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCCCTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACTGAAGTTCTTAAAGCCCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTATAATATGAAATGTAGATGGTTGCCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAACCCTGTGCATAGTAATCATTACTTTGGGGACGAGTCTACCATCATTGAAAACGATGGCGTTGTAAAATCGCCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCTTTCCTTGCCCAGCTCCGAAATCTTAGTTCCTCTTCCCCTTCCCTCTTTAGATGGATAGTTCAATCTTGTGTAAATCTGATTTTCGGTAGTAGAAGTTGTCGATCTCGGTGTCCAATATTGATTGGTGATGCCCTTGCTCCTTGGCTGTCGTTTTCTTGTCGTCAAGATTCCCGAAATCCTTTCCTCTTTGAACTCGCAAAGATGACTCAAGACGCCGAGATGAAAGAGCTTCCTGCTCCATTGTCGTCTTCTTCCTCTTCAGCTTCCCCCTCAACTCTACAACATTTGAAAGAGATTGTGTCGCTCATTGAGACCGGTGCCTATGCTCGGGAGGTTCGGCGGATTGTTCGTGCCATTCGTCTGACTATGGCGTTGAGGCGGAAGTTGAAGGCTTCTGTCGTTTCTCAATTTCTGAATCTTGTTCTCCCCCCAGGGTCCGAGGTGCACACTAGGTTATCGTCATTTCTTCCAAAGGAGGATGACTGTGAAATGGATGTTGACACGGCAACACAAGCTCCTGCGAAACACCCTTTGCCCGAGATAGAGATATTTTGCTACTTGATTGTGCTAATATTTTTGATTGATCAGAAGAAATATGCTGATGCTAAAGCTTGCGCCTCCGCAAGCATTGCTCGGGTTAAGAACCTTAATAGGAGAACAGTCGATGTTTTAGCATCCAGGCTCTACTTCTATTATTCCCTCAGCTATGAACTCACTGGCGATCTTGCTGAAATAAGGGGCAACCTCCTAGCCCTGCATCGCATTGCAACCTTGCGCCATGATGAATTGGGTCAGGAAACCCTCCTTAACCTTCTACTTCGTAATTACCTCCACTACAACCTTTATGATCAAGCTGAGAAGTTGAGGTCCAAGGCACCCCGGTTTGAAGCTCACTCAAATCAGCAGTTCTGTAGATACCTATTTTACCTTGGCAAGATCAGGACCATTCAGCTGGAGTACACAGATGCAAAGGAGTCTCTTCTACAAGCTGCTCGGAAAGCACCCATTGCAGCCCTTGGTTTTCGAGTGCAATGCAACAAATGGGCAATCATTGTTCGCTTGCTGCTAGGAGAAATCCCTGAGAGGACCGTTTTCATGCAGAAAGGCATGGAGACAGCTCTGAGGCCATACTTTGAACTTACAAATGCTGTGAGAATTGGTGACTTGGAGCTTTTCAGGACAGTTGCCGAGAAGTTCTCTGGCACTTTCAGCTCAGATCGAACTAACAACTTGATCGTGAGGCTGCGACACAATGTCATTAGGACTGGGCTTCGCAACATTAGCATTTCTTATTCACGAATTTCTCTGGTTGATGTTGCTAAAAAGCTTAGGTTGGACTCAGCAAATCCTGTTGCTGATGCTGAGAGCATCGTCTCCAAGGCAATCCGAGATGGAGCAATTGATGCAACAGTCGATCATGGGAAGGGATGGATGGTATCAAAGGAGACTGGTGATATTTACTCTACCAATGAACCTCAGCTTGCTTTCAACTCGAGGATTGCGTTTTGCCTGAATATGCATAATGAGGCAGTTCGTGCCCTTCGGTTTCCACCAAATTCACACAAGGAAAAAGAAAGCGCCGAGAAAAGAAGAGAAAGACAACAGCAGGAGCAAGAACTTGCAAAACACATAGCCGAAGAAGATGATGACGACTTTTAG 3771 45.16 MRRDERQEVVARSRIGPNIHRFAQLPSPFTPNQHSPLSSSDLHSPSPSLSGPNLLVCNPFCFDLCLVPFVQSRRSLSRGACYVFSYSFCLYPILCFKRLEAWLCVSFEMGRKWKLFFQRPIYEREIGGLTNLIILLEKQKTSNLSNQQLWALHLSGISLTVWSSITKRFQPLKASKSQSSIISGRRTQKTKHSMDSQMDGPTGRSGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNHMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRNLSSSSPSLFRWIVQSCVNLIFGSRSCRSRCPILIGDALAPWLSFSCRQDSRNPFLFELAKMTQDAEMKELPAPLSSSSSSASPSTLQHLKEIVSLIETGAYAREVRRIVRAIRLTMALRRKLKASVVSQFLNLVLPPGSEVHTRLSSFLPKEDDCEMDVDTATQAPAKHPLPEIEIFCYLIVLIFLIDQKKYADAKACASASIARVKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVAEKFSGTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHGKGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 1256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 642745 657394 - ClG42_06g0004700.10 Clacu06g0047 250695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0047 1256 Coils Coil 1223 1250 - -
Clacu06g0047 1256 FunFam Non-specific serine/threonine protein kinase 592 710 - -
Clacu06g0047 1256 SMART uba_6 491 528 IPR015940 -
Clacu06g0047 1256 MobiDBLite consensus disorder prediction 1220 1249 - -
Clacu06g0047 1256 SUPERFAMILY KA1-like 525 711 IPR028375 -
Clacu06g0047 1256 Pfam Proteasome regulatory subunit C-terminal 1189 1255 IPR013586 GO:0000502(InterPro)|GO:0030234(InterPro)|GO:0042176(InterPro)
Clacu06g0047 1256 SUPERFAMILY Winged helix DNA-binding domain 1116 1190 IPR036390 -
Clacu06g0047 1256 FunFam 26S proteasome non-ATPase regulatory subunit 3 889 1212 - -
Clacu06g0047 1256 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1114 1207 IPR000717 -
Clacu06g0047 1256 Gene3D Transferase(Phosphotransferase) domain 1 209 547 - -
Clacu06g0047 1256 FunFam Non-specific serine/threonine protein kinase 207 546 - -
Clacu06g0047 1256 SMART serkin_6 216 468 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0047 1256 SMART PCI/PINT associated module 943 1114 - -
Clacu06g0047 1256 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0047 1256 Pfam Kinase associated domain 1 669 710 IPR001772 -
Clacu06g0047 1256 ProSiteProfiles PCI domain profile. 1008 1189 IPR000717 -
Clacu06g0047 1256 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 489 529 IPR015940 -
Clacu06g0047 1256 ProSitePatterns Protein kinases ATP-binding region signature. 222 245 IPR017441 GO:0005524(InterPro)
Clacu06g0047 1256 MobiDBLite consensus disorder prediction 177 208 - -
Clacu06g0047 1256 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 772 1252 IPR050756 GO:0006511(PANTHER)|GO:0008541(PANTHER)
Clacu06g0047 1256 ProSiteProfiles Protein kinase domain profile. 216 468 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0047 1256 Gene3D - 1023 1208 - -
Clacu06g0047 1256 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 663 711 IPR001772 -
Clacu06g0047 1256 CDD AMPKA_C 586 709 - -
Clacu06g0047 1256 MobiDBLite consensus disorder prediction 1220 1256 - -
Clacu06g0047 1256 Gene3D Kinase associated domain 1, KA1 592 711 - -
Clacu06g0047 1256 CDD UBA_SnRK1_plant 490 530 - -
Clacu06g0047 1256 FunFam Non-specific serine/threonine protein kinase 206 295 - -
Clacu06g0047 1256 CDD STKc_AMPK_alpha 213 468 - -
Clacu06g0047 1256 SUPERFAMILY Protein kinase-like (PK-like) 213 486 IPR011009 -
Clacu06g0047 1256 Pfam Protein kinase domain 216 468 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0047 1256 Pfam UBA/TS-N domain 490 526 IPR015940 -
Clacu06g0047 1256 Pfam PCI domain 1106 1185 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0426 Clacu-Chr2:3846266 Clacu06g0047 Clacu-Chr6:642745 1.20E-252 dispersed
Clacu02g2166 Clacu-Chr2:34801422 Clacu06g0047 Clacu-Chr6:642745 8.80E-39 dispersed
Clacu06g0047 Clacu-Chr6:642745 Clacu11g0201 Clacu-Chr11:1722123 3.40E-195 dispersed
Clacu06g0047 Clacu-Chr6:642745 Clacu02g2460 Clacu-Chr2:37542285 5.60E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73613 PF00069 Pkinase 1.50E-79 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0047 K07198 - csv:101211720 1009.59