Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0052 ATGTCTAATGTTGAGGGGGTACATGGGTGGGCTAAGCCGAGGTCGTTGCGCGCTCCCGCATCGGTCCCAACATCCATCGGTACGCCCCGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCATCGCCCTCACTCTCAGGTTTTCTTCTCCTCTTTCTCCTACATCACTTACAGAATGATTTATTCTGTATTCACGGACATTCGGAACGCCGATTCTCGTTTAGTATCTCGTTCTTGTCCGTCTTTGTTTTGCATTAATCGATTAGCTCCAATTCTAGATCTGGCTTTTCAAGCATTGCAGTTGAAGATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCAGGAGAGAGAATACAACAAACAAAAGAGTTGCTTGCTTCTTGTGAAAGCATTGAATGGCAGGTGGACGAGTTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACTGCTAGAACACAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGGAAGGAGCAAACGGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGACAGATCAAACTTATATACAGCCAACCAAGCAAATGATGACTTCATCACATCCGAATCAGATAGACAGCTGCTTCTAATAAAGCAGCAGGACGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACATGAAGAGCTCCTTGCACAGGATAAAATTATCGACGACCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTAGCAGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTCTTGGTGGCTCTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG 1077 44.85 MSNVEGVHGWAKPRSLRAPASVPTSIGTPRCPLPSLPTSIHLFLPQIYTLHRPHSQVFFSSFSYITYRMIYSVFTDIRNADSRLVSRSCPSLFCINRLAPILDLAFQALQLKMPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDSGERIQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDDAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNAHETDRSNLYTANQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 691193 695495 - ClG42_06g0005200.10 Clacu06g0052 250700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0052 358 SUPERFAMILY DNA repair protein MutS, domain III 35 153 IPR036187 -
Clacu06g0052 358 CDD SNARE_NTD_AtSYP61-like 117 214 - -
Clacu06g0052 358 SMART tSNARE_6 261 328 IPR000727 -
Clacu06g0052 358 FunFam Syntaxin 10 115 217 - -
Clacu06g0052 358 CDD SNARE_Qc 269 326 - -
Clacu06g0052 358 Gene3D - 273 337 - -
Clacu06g0052 358 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 266 328 IPR000727 -
Clacu06g0052 358 FunFam syntaxin-61 isoform X1 269 330 - -
Clacu06g0052 358 SUPERFAMILY SNARE fusion complex 265 328 - -
Clacu06g0052 358 Gene3D - 114 216 - -
Clacu06g0052 358 Pfam SNARE domain 303 354 IPR000727 -
Clacu06g0052 358 Pfam Syntaxin 6, N-terminal 118 211 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Clacu06g0052 358 ProSitePatterns Syntaxin / epimorphin family signature. 272 311 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Clacu06g0052 358 PANTHER SYNTAXIN 120 345 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Clacu06g0052 358 SUPERFAMILY t-snare proteins 117 212 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0052 Clacu-Chr6:691193 Clacu10g0465 Clacu-Chr10:5680693 6.40E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0052 K08500 - csv:101212527 420.624